View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_93 (Length: 335)
Name: NF11309A_low_93
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 7962024 - 7962339
Alignment:
| Q |
12 |
atgaaagtcattgtaaacatggnnnnnnngaagggtgaaacaatattcagattgtctcatgttgaataaacaaacgtgtttaatacatgcataatcgata |
111 |
Q |
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| T |
7962024 |
atgaaagtcattgtaaacatggtttctt-gaagggtgaaacaatattcagattgtctcatgttgagtaaacaaacgtgtttaatacatgcataatcgata |
7962122 |
T |
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| Q |
112 |
agattttcgcatctaatagactagttttttgatctggacttctctgatgggcttaaatctaaacaatgtggcgtgaaataatgtgaagttagtttaataa |
211 |
Q |
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| T |
7962123 |
agattttcacatctaatagactagttttttgaattggacttctctaatggacttaaatctaaacaatgtggcgtgaaataatgtgaagttagcttaataa |
7962222 |
T |
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| Q |
212 |
tcaactgaaatattgattaatggttagattagtttgtgtgaggacaaaagagagcatctcttgagcacacaagtttctcaagataattgagatttattta |
311 |
Q |
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| T |
7962223 |
tcaactgaaatattgattaatggttagattagtttgtgtgaggacaaaagagagcatctcttgagcacacaagtttctcaagataattgagatttattta |
7962322 |
T |
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| Q |
312 |
attgattgatctctctc |
328 |
Q |
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| T |
7962323 |
attgattgatctctctc |
7962339 |
T |
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