View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_99 (Length: 328)
Name: NF11309A_low_99
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_99 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 44 - 322
Target Start/End: Original strand, 32524677 - 32524959
Alignment:
| Q |
44 |
agttaatttttcattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
143 |
Q |
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| T |
32524677 |
agttaattttccattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
32524776 |
T |
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| Q |
144 |
cctaatccatttctactttca--ttttgttaacttccatttaaagaccctttaacgannnnnnnnnnnnnnnnnnnngtaaaattaagtaactacccact |
241 |
Q |
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| T |
32524777 |
cctaatccatttctactttcattttttgttaacttccatttaaagaccctttaacgattttttctcctttttgttttgtaaaattaagtaactacccact |
32524876 |
T |
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| Q |
242 |
aactc--ataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
322 |
Q |
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| T |
32524877 |
atctcatataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
32524959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32524607 - 32524666
Alignment:
| Q |
1 |
tagatatgaagctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
60 |
Q |
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| T |
32524607 |
tagatatgaacctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
32524666 |
T |
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