View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_high_13 (Length: 449)
Name: NF11309_high_13
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 51181486 - 51181053
Alignment:
| Q |
1 |
ttataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagta |
100 |
Q |
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| T |
51181486 |
ttataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagta |
51181387 |
T |
|
| Q |
101 |
aaaataattcctgcatatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaattatttcttgtgctttatgattata |
200 |
Q |
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| T |
51181386 |
aaaataattcctgcatatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaattatttcttgtgctttatgattata |
51181287 |
T |
|
| Q |
201 |
ttcatgaaccgtacaagtttaacatgagtagtaagtaaagtaggtacctttgtttcgctactttctcttggcaaaatctgacaacaatgtccgttagata |
300 |
Q |
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| T |
51181286 |
ttcatgaaccgtacaagtttaacatgaatagtaagtaaagtaggtacctttgtttcgctactttctcttggcaaaatctgacaacaatgtccgttagata |
51181187 |
T |
|
| Q |
301 |
gctgctaaacataacttgtatcagaagttcagaaccaatacataaaagcaacaggaacacaagacaatattaggtgcctcttaatattgaagaatcctag |
400 |
Q |
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| T |
51181186 |
gctgctaaacataacttgtatcagaagttcagaaccaatacataaaagcaacaggaacacaagacaaaattaggtgcctcttaatattgaagaatcctag |
51181087 |
T |
|
| Q |
401 |
gacttctatctacagcgtttgtttgcatggtttc |
434 |
Q |
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| T |
51181086 |
gacttctatctacagtgtttgtttgcatggtttc |
51181053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 14181181 - 14181522
Alignment:
| Q |
1 |
ttataattgatgaatataatcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagta |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14181181 |
ttataattgatgaatataatcacatgttgaatgcaagataccccatttctcagcaagttttggctggaaaggaattctggagaaagtgcttggtgaagta |
14181280 |
T |
|
| Q |
101 |
aaaataattcctgcatatgaacgattactatgttatttcatttatatatactaaagatttaattgctgtgcgaaattatttcttgtgctttatgattata |
200 |
Q |
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||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
14181281 |
aaaataaatcctgcatatgaatgattact--gttatttcatttatatataccaaagatttaatcgctgtgcaaaattatttcttgtgctttatgattata |
14181378 |
T |
|
| Q |
201 |
ttcatgaaccgtacaagtttaacatgagtagtaagtaaagtaggtacctttgtttcgctactttctcttggcaaaatctgacaacaatgtccgttagata |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| | ||||||||| ||||| |
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| T |
14181379 |
ttcatgaaccacacaagtttaacatgagtagtaagtaaagtaaatacctttgtttcgctactgtctcttggcgaaatctgatgagaatgtccgtcagata |
14181478 |
T |
|
| Q |
301 |
gctgctaaacataacttgtatcagaagttcagaaccaatacata |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14181479 |
gctgctaaacataacttgtatcagaagttcagaaccaatacata |
14181522 |
T |
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