View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_high_20 (Length: 360)
Name: NF11309_high_20
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_high_20 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 13270 - 13397
Alignment:
| Q |
196 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatgataataa |
295 |
Q |
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| T |
13270 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccgatgacatggcatggaaatattaaaaaatttaactatgtaaagaatgataataa |
13369 |
T |
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| Q |
296 |
agaaaagaatagatccaacaaacaaaaa |
323 |
Q |
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| T |
13370 |
agaaaagaatagatccaacaaacgaaaa |
13397 |
T |
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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 42212019 - 42211920
Alignment:
| Q |
94 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
193 |
Q |
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| T |
42212019 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
42211920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 310
Target Start/End: Complemental strand, 47345551 - 47345444
Alignment:
| Q |
203 |
ttcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatgataataaagaaaag |
302 |
Q |
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| T |
47345551 |
ttcatgtattactcttttggtacacccttttatagcactgatgacatgacatggaaatattaaacaatttaactttgtaaagaatgataaaaaagaaaag |
47345452 |
T |
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| Q |
303 |
aatagatc |
310 |
Q |
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| T |
47345451 |
aatagatc |
47345444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 3798071 - 3798110
Alignment:
| Q |
271 |
ttaactttgtaaataatgataataaagaaaagaatagatc |
310 |
Q |
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| T |
3798071 |
ttaactttgtaaagaatgataaaaaagaaaagaatagatc |
3798110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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