View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_high_3 (Length: 781)
Name: NF11309_high_3
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 4 - 762
Target Start/End: Complemental strand, 35895320 - 35894571
Alignment:
| Q |
4 |
ggaggagcacagacaaatggttgatcttgtctcacaatcagaggaatattccaaagaattggatgttgctgtcagagcagtccagatggcatgctctcta |
103 |
Q |
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| T |
35895320 |
ggaggaggacagacaaatggttggtcttgtctcacaatcagaagaatattccaaagaattggatgttgctgtcagagcagtccagatggcatgctctcta |
35895221 |
T |
|
| Q |
104 |
tgtcaaaaagtgcaagaaaccttgatttccaagtcatccaaggattgtaattcttcagtcacagtggcaggtgaatattctctaattgtgaaaattgtca |
203 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35895220 |
tgtcaaaaagtgcaagaaaccttgatttccaag---------gattgtaattcttcagtcacagtggcaggtgaatattctctaattgtggaaattgtca |
35895130 |
T |
|
| Q |
204 |
tgtcttgtttgcgtgtgttatttttgttttattaagctaatgagttaaacttttatcttagcctgccatatatggatttatatggaattctgagttgatt |
303 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35895129 |
tgtcttgtttgcgtgagttatttttgttttattaagctaatgagttaaacttttatcttagcctgccatatatggatttatatggaattctgagttgatt |
35895030 |
T |
|
| Q |
304 |
attgtgtagggtgtctactgtccggtatctactgcatgaaagtgcagggagtgatctcatcaaacacaacttctgccacttgtgcctaagttgctttgat |
403 |
Q |
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| T |
35895029 |
attgtatagggtgtctactgtccggtatctactgcatgaaagtgcagggagtgatctcatcaaacacaacttctgccacttgtgcctaagttgctttgat |
35894930 |
T |
|
| Q |
404 |
atacactcaaattatgacaagtggcttcttcgatttattatgacgtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaa |
503 |
Q |
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|| || |||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35894929 |
atccagtcaaattatgacaagtggcttcttggatttattctgaagtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaa |
35894830 |
T |
|
| Q |
504 |
tgaatacttatactctaaaatctttaaagtcaatgaaaaactttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaatta |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35894829 |
tgaatacttatactctaaaatctttaaagtcaatgaaaaactttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaatta |
35894730 |
T |
|
| Q |
604 |
tgatggtaaaatggaaaatgataaagacttagtattatagattgtcgactccatgttggttggtatgagaagcttgatggagtatttaagtttggtcata |
703 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35894729 |
tgatggtaaaatggaaaatgataaagacttagtattatagattgtcgactccatgttggttggtatgagaagcttgatggagtatttaagtttgctcata |
35894630 |
T |
|
| Q |
704 |
tgaaggtttgtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtttaaga |
762 |
Q |
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| T |
35894629 |
tgaaggtttgtgcaacggtaaagttgttgtcctgtgactgaaaagtcgcgggtttaaga |
35894571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 3109541 - 3109629
Alignment:
| Q |
47 |
gaatattccaaagaattggatgttgctgtcagagcagtccagatggcatgctctctatgtcaaaaagtgcaagaaaccttgatttccaa |
135 |
Q |
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||||||||||| |||||||||||||||||||||||||| || ||||| || || || ||||| | |||||| || | ||||||||||| |
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| T |
3109541 |
gaatattccaaggaattggatgttgctgtcagagcagtgcaaatggcttgttcactttgtcagagagtgcaggagagtttgatttccaa |
3109629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 757
Target Start/End: Complemental strand, 2436059 - 2436015
Alignment:
| Q |
713 |
gtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
757 |
Q |
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| T |
2436059 |
gtgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
2436015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 757
Target Start/End: Complemental strand, 2435951 - 2435909
Alignment:
| Q |
715 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
757 |
Q |
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|||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
2435951 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
2435909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 746
Target Start/End: Complemental strand, 10378891 - 10378858
Alignment:
| Q |
713 |
gtgcaacggtaaagttgttgtcccgtgactgaaa |
746 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
10378891 |
gtgcaacggtaaagttgttgtcacgtgactgaaa |
10378858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 757
Target Start/End: Original strand, 19265786 - 19265828
Alignment:
| Q |
715 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
757 |
Q |
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| T |
19265786 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
19265828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 757
Target Start/End: Original strand, 26573120 - 26573162
Alignment:
| Q |
715 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
757 |
Q |
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|||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
26573120 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
26573162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 757
Target Start/End: Complemental strand, 45620993 - 45620951
Alignment:
| Q |
715 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
757 |
Q |
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| T |
45620993 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
45620951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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