View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309_high_30 (Length: 253)
Name: NF11309_high_30
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 33900499 - 33900255
Alignment:
| Q |
1 |
ccatcatttggaaatattgtggctctaaaacaccctgatcctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttataagtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33900499 |
ccatcatttggaaatattgtggctctaaaacaccctgatcctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttataagtta |
33900400 |
T |
|
| Q |
101 |
agacaattttattaatgtctaaatatgtttctatggtttcaacaccttgaagtgtcctaagagattgttcaatgatatacattgattgttcattttttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33900399 |
agacaattttattaatgtctaaatatgtttctatggtttcaacaccttgaagtgtcctaagagattgttcaatgatatacattgattgttcattttttat |
33900300 |
T |
|
| Q |
201 |
gccatcaattttaagttcaattttgcttatgtgttcccctttgct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33900299 |
gccatcaattttaagttcaattttgcttatgtgttcccctttgct |
33900255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 42516206 - 42516318
Alignment:
| Q |
4 |
tcatttggaaatattgtggctctaaaacaccctgatcctgaagattcaatgagttcaatgaaagttcttggaccagtcatataaggtttataagttaaga |
103 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||| || ||| ||||| | |||||||| ||| |||| ||||| ||||| ||||||||| |||||| |
|
|
| T |
42516206 |
tcatttagaaatatcatggctctaaaacaacctgatactttagactcaattacatcaatgaaggtttttggtccagttatatatggtttataaattaaga |
42516305 |
T |
|
| Q |
104 |
caattttattaat |
116 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
42516306 |
caatttttttaat |
42516318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University