View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309_high_35 (Length: 238)

Name: NF11309_high_35
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309_high_35
NF11309_high_35
[»] chr3 (4 HSPs)
chr3 (12-220)||(11343674-11343887)
chr3 (115-209)||(6162663-6162760)
chr3 (117-162)||(50663926-50663970)
chr3 (169-209)||(3860246-3860286)
[»] chr1 (1 HSPs)
chr1 (71-151)||(17696231-17696311)
[»] chr2 (3 HSPs)
chr2 (71-166)||(11573680-11573774)
chr2 (167-211)||(20685004-20685048)
chr2 (120-209)||(37892994-37893086)
[»] chr4 (3 HSPs)
chr4 (12-146)||(38677536-38677674)
chr4 (84-144)||(9765399-9765459)
chr4 (121-209)||(33164492-33164583)
[»] chr7 (2 HSPs)
chr7 (71-146)||(13552777-13552852)
chr7 (75-143)||(5729048-5729116)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 11343674 - 11343887
Alignment:
Q  12 agaagcataggtgtagttgttggaggctgatggtgaaaagaagagaaatgctgcatgagt-aactcacgctgcgtgacttaagttacgctaacattataa 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  11343674 agaagaataggtgtagttgttggaggctgatggtgaaaagaagagaaatgctgcgtgagttaactcacgctgcgtgacttaagttacgctaacattataa 11343773  T
Q  111 ctgacatgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaa 206  Q
    |||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||    ||||||||| |||||||||||||| | ||||| | |||||    
T  11343774 ctggtatgagttaagtcacgctacctgagttaacatgcgtatggggcatttttgacttttactttgagagtgagcggaaccatttgaataatgagcagaa 11343873  T
Q  207 ttcttgtgatattt 220  Q
    ||||||||||||||    
T  11343874 ttcttgtgatattt 11343887  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 6162663 - 6162760
Alignment:
Q  115 catgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaattc 209  Q
    ||||| |||||||||||||||   |||||||| |||| |||||||||| |||    |||||| ||||||||||||||||| || |||| | ||||||||    
T  6162663 catgacttaagtcacgctacgcatgttaacatgcgta-ggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 50663970 - 50663926
Alignment:
Q  117 tgagttaagtcacgctacgtgagttaacatacgtatggggcatttt 162  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||    
T  50663970 tgagttaactcacgctacgtgagttaacatgcgta-ggggcatttt 50663926  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 3860286 - 3860246
Alignment:
Q  169 tttgagaatgagcggaaccattgggataattaacagaattc 209  Q
    |||||||||||||| ||||||| ||||||| ||||||||||    
T  3860286 tttgagaatgagcgaaaccatttggataatgaacagaattc 3860246  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 17696311 - 17696231
Alignment:
Q  71 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacatacgta 151  Q
    ||||||||| ||| |||||||||| ||||||   |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17696311 taactcacgttgcatgacttaagtcacgctactcttataactgacatgagttaactcacgctacgtgagttaacatgcgta 17696231  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 11573774 - 11573680
Alignment:
Q  71 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacatacgtatggggcatttttgac 166  Q
    |||||||||||||||||||||||||||| |  | ||||||||  ||   ||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  11573774 taactcacgctgcgtgacttaagttacgttctccttataactagcacatgttaactcacgctacgcaagttaacatacgta-ggggcatttttgac 11573680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 20685048 - 20685004
Alignment:
Q  167 actttgagaatgagcggaaccattgggataattaacagaattctt 211  Q
    |||||||||||||||||||||||| || |||| | ||||||||||    
T  20685048 actttgagaatgagcggaaccatttgggtaatgagcagaattctt 20685004  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 37892994 - 37893086
Alignment:
Q  120 gttaagtcacgctacgtgagttaacatacgtatggggcatttttgac----actttgagaatgagcggaaccattgggataattaacagaattc 209  Q
    ||||| ||||||||||| ||||||||| | || |||||||||| |||    |||||| ||||||||| ||||||| || |||||| ||||||||    
T  37892994 gttaactcacgctacgtaagttaacatgcata-ggggcattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 38677536 - 38677674
Alignment:
Q  12 agaagcataggtgtagttgttggaggctgatggtgaaaagaagagaaat---gct-gcatgag-taactcacgctgcgtgacttaagttacgctaacatt 106  Q
    ||||| |||||||||||||||||  ||||||||| ||||||||||||||    ||  | |||| ||||||||| |||||||||||||| || |||||||     
T  38677536 agaagaataggtgtagttgttggtagctgatggtaaaaagaagagaaatctaactaacgtgagttaactcacgttgcgtgacttaagtcacactaacatc 38677635  T
Q  107 ataactgacatgagttaagtcacgctacgtgagttaacat 146  Q
    || |||| | |||| ||| ||||||||||| |||||||||    
T  38677636 at-actggcgtgagataattcacgctacgtaagttaacat 38677674  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 9765459 - 9765399
Alignment:
Q  84 gtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaac 144  Q
    |||| |||||| |||||||||| ||||||||||| |||||| |||||||| |||| |||||    
T  9765459 gtgatttaagtcacgctaacatcataactgacataagttaactcacgctatgtgacttaac 9765399  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 33164492 - 33164583
Alignment:
Q  121 ttaagtcacgctacgtgagttaacatacgtatggggcatttttgaca----ctttgagaatgagcggaaccattgggataattaacagaattc 209  Q
    |||||||||||||||   |||||||| |||| |||||||||| ||||    ||||||||||||||||||||||| || |||| | ||||||||    
T  33164492 ttaagtcacgctacgcatgttaacatgcgta-ggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 13552852 - 13552777
Alignment:
Q  71 taactcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaacat 146  Q
    |||||||||||||||||||||||| ||  |||||| |||| ||   |||||||| ||| |||||||||||||||||    
T  13552852 taactcacgctgcgtgacttaagtcacattaacatcataattggtgtgagttaactcaagctacgtgagttaacat 13552777  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 5729048 - 5729116
Alignment:
Q  75 tcacgctgcgtgacttaagttacgctaacattataactgacatgagttaagtcacgctacgtgagttaa 143  Q
    |||||||||||||||||||| ||| |    |||||||||| ||||||||| ||||| ||||||| ||||    
T  5729048 tcacgctgcgtgacttaagtcacgtttctcttataactgatatgagttaactcacgttacgtgaattaa 5729116  T

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