View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309_high_5 (Length: 593)
Name: NF11309_high_5
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 38456718 - 38456248
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456718 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
38456619 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456618 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38456519 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456518 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38456419 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38456418 |
tgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcg |
38456319 |
T |
|
| Q |
401 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456318 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38456248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 38181357 - 38180888
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38181357 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38181258 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181257 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38181159 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181158 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38181059 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38181058 |
tgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcg |
38180959 |
T |
|
| Q |
401 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180958 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38180888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 38189774 - 38190243
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38189774 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38189873 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189874 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38189972 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189973 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38190072 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38190073 |
tgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcg |
38190172 |
T |
|
| Q |
401 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190173 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38190243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 38208581 - 38208112
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38208581 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38208482 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208481 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38208383 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208382 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38208283 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38208282 |
tgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcg |
38208183 |
T |
|
| Q |
401 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208182 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38208112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 38216999 - 38217468
Alignment:
| Q |
1 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38216999 |
agtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaa |
38217098 |
T |
|
| Q |
101 |
atttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
200 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217099 |
atataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacattatt |
38217197 |
T |
|
| Q |
201 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217198 |
gtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatcttct |
38217297 |
T |
|
| Q |
301 |
tgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38217298 |
tgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcg |
38217397 |
T |
|
| Q |
401 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217398 |
cattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38217468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 447
Target Start/End: Original strand, 26032886 - 26033324
Alignment:
| Q |
2 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaaa |
101 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||| | ||||||||||||||||| | |||||||||| ||||||||||| ||||| |
|
|
| T |
26032886 |
gtggaaggtatgaacatggtgggggtggagccataggtatataa------gaagttccaataatgcttc---ccctgaaattaatgaaagtaacagtaaa |
26032976 |
T |
|
| Q |
102 |
tttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccaca---tta |
198 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26032977 |
tttaacac-ctcgtataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacaatatta |
26033075 |
T |
|
| Q |
199 |
ttgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatctt |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26033076 |
ttgtagaacatgtttgggacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatgaaattcatctt |
26033175 |
T |
|
| Q |
299 |
cttgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttct |
398 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26033176 |
cttgtgaatcctcaatttgttggctactattcagctcatcatccagttccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttct |
26033275 |
T |
|
| Q |
399 |
cgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactga |
447 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033276 |
cgcgttccaaaagttcttgatgtcattatcgcttcttcccggtaactga |
26033324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 327 - 446
Target Start/End: Complemental strand, 38447566 - 38447447
Alignment:
| Q |
327 |
attcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatta |
426 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38447566 |
attcaactcatcatccagttccatgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcatta |
38447467 |
T |
|
| Q |
427 |
tcgcttcttcccggtaactg |
446 |
Q |
| |
|
||| ||||||| || ||||| |
|
|
| T |
38447466 |
tcggttcttccaggcaactg |
38447447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 575
Target Start/End: Complemental strand, 38180808 - 38180761
Alignment:
| Q |
528 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180808 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
38180761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 575
Target Start/End: Original strand, 38190323 - 38190370
Alignment:
| Q |
528 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190323 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
38190370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 575
Target Start/End: Complemental strand, 38208032 - 38207985
Alignment:
| Q |
528 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208032 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
38207985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 575
Target Start/End: Original strand, 38217548 - 38217595
Alignment:
| Q |
528 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217548 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
38217595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 575
Target Start/End: Complemental strand, 38456168 - 38456121
Alignment:
| Q |
528 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456168 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
38456121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 575
Target Start/End: Original strand, 26033448 - 26033495
Alignment:
| Q |
528 |
tacctcatgagccagcttagaccatttgaattcaccatactttatata |
575 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26033448 |
tacctcctcagccagcttagaccatttgaattcaccatactttttata |
26033495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 38447688 - 38447655
Alignment:
| Q |
181 |
gaagtacttcccacattattgtagaacatgtttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
38447688 |
gaagtacttcccacattattgtagaacatatttg |
38447655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 6067743 - 6067860
Alignment:
| Q |
181 |
gaagtacttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtg |
280 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6067743 |
gaagtacttcccacgttattgtagaacatgtttgggacatctaaaagtgtttcatttatctcataaaaaatttatggatattttctaaatttcaattgtg |
6067842 |
T |
|
| Q |
281 |
gtatattaaattcatcttc |
299 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
6067843 |
gtata-taaattcatcttc |
6067860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 266 - 437
Target Start/End: Original strand, 53351249 - 53351429
Alignment:
| Q |
266 |
taaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctact------------attcaactcatgatcaggttccatgtt |
353 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||| || ||||||| || |
|
|
| T |
53351249 |
taaatttcacttgcggtatattaaattcatcatcttgtgaatccttaacttgttggctatttgaaccacttttattcaactcatcattcagttccatctt |
53351348 |
T |
|
| Q |
354 |
gtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
437 |
Q |
| |
|
||| || |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53351349 |
gtcaggaaagggtgacat---acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttcc |
53351429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 564
Target Start/End: Original strand, 53351852 - 53351887
Alignment:
| Q |
529 |
acctcatgagccagcttagaccatttgaattcacca |
564 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53351852 |
acctcttgagccagcttagaccatttgaattcacca |
53351887 |
T |
|
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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 350 - 437
Target Start/End: Complemental strand, 38342826 - 38342739
Alignment:
| Q |
350 |
tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
437 |
Q |
| |
|
||||||| |||||||||||||||| | | ||| | ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38342826 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc |
38342739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 350 - 437
Target Start/End: Complemental strand, 38447019 - 38446932
Alignment:
| Q |
350 |
tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
437 |
Q |
| |
|
||||||| |||||||||||||||| | | ||| | ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38447019 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc |
38446932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 38343063 - 38343008
Alignment:
| Q |
131 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
186 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38343063 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38343008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 38447256 - 38447201
Alignment:
| Q |
131 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
186 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38447256 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38447201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 428
Target Start/End: Complemental strand, 4121709 - 4121643
Alignment:
| Q |
362 |
agggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
428 |
Q |
| |
|
||||||| | ||||| ||||| | |||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4121709 |
agggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgatagcattatc |
4121643 |
T |
|
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