View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309_low_1 (Length: 2648)
Name: NF11309_low_1
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 721; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 1537 - 2479
Target Start/End: Original strand, 4725044 - 4725984
Alignment:
| Q |
1537 |
cattaccatcgtcttcatcgtcatcggttgaaaggtgtgtagccttcttcttcgatccgtcttcagcttcagtccataacattctctgcatccttgctgt |
1636 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4725044 |
cattaccatcgtcttcatcgtcatcggttgaaaggtgtgtagccttcttcttcgatccgtcttcagcttcagtccataacattctctgcatccttgctgt |
4725143 |
T |
|
| Q |
1637 |
gaaaattgtttgaagttcattgtaaaatggaaattgttgtttcaacacttctgtctccattgtttcacatccctttacatgtcaaaaaataaatgtagca |
1736 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4725144 |
gaaaattgtttgaagttcattgtaaaatggaaattgttgtttcaacacttctgtctccattgtttcacatccctttacatgtcaaaaaataaatgtagca |
4725243 |
T |
|
| Q |
1737 |
cccttagcacatataaaaacctataaaaccatgcaacaaattttttaacttcgacgctagaaaacaattaaattagcgaaataattaatagagcgaaaaa |
1836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4725244 |
cccttagcacatataaaaacctataaaaccatgcaacaaattttttaacttcgacgctggaaaacaattaaattagcgaaataattaatagagcgaaaaa |
4725343 |
T |
|
| Q |
1837 |
tgtgtcatccgtgtctaattaatgacgaagaaaatacnnnnnnncactaagttttgtgatgaagaaaatacttttcttcactaaattttgtgatgaagaa |
1936 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4725344 |
tgtgtcatccgtgtctaattaatgacgaagaaaatactttttttcactaaactttgtgatgaagaaaatacttttcttaactaaattttgtgatgaagaa |
4725443 |
T |
|
| Q |
1937 |
aataatgatgagtttaggttttttcatctctaatttttggcactgattttactttatgctgtaactattgcagtatacccatattaattttctatatcac |
2036 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4725444 |
aataatgatgagtttaggttttttcatctctaatttttggcactgattttactttatgttgtaactattgcagtatacccatattaattttctatatcac |
4725543 |
T |
|
| Q |
2037 |
aaaaaattaccaatagcatggtaatatatactttgcatgcattaacactaattaatcagtcacagcttctccaaacaccaatttatcttaactattttat |
2136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
4725544 |
aaaaaattaccaatagcatggtaatatatactttgcatgcattaacactaattaatcagtcacaacttctccatacaccaatttatcttaactattttat |
4725643 |
T |
|
| Q |
2137 |
tgaggtacatatatatacactaaatttaag-nnnnnnnnnnngacatggaactaaatttaagttgcaacattatttgatgagannnnnnnnngcaacatt |
2235 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4725644 |
tgaggtacatatatatacactaaatttaagttttttttttttgacatggaactaaatttaagttgcaacattatttgatgaga-ttttttttgcaacatt |
4725742 |
T |
|
| Q |
2236 |
tcatatttcccagttcccaccttatgatatactagtagactaatgtttagccagatgcttggcgtgacaatttttnnnnnnngtgattaagta-annnnn |
2334 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4725743 |
tcatatttcccagttcccaccttatgata---tagtagactaatgtttagccagatgcttggcgtgacaatttttaaaaaaagtgattaagtactttttt |
4725839 |
T |
|
| Q |
2335 |
nnnnngagagaagagattaagtaattaataatttgatattcaagattttgagtcacatacacaacaattatatatgaatttcnnnnnnnatgtaaatcat |
2434 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4725840 |
tttttgagagaagagattaagtaattaataatttgattttcaagattttgagtcacatacacaacaattatatatgaatttctttttttatgtaaatcat |
4725939 |
T |
|
| Q |
2435 |
atatcaatctgcgcaacttagatactaacaagaagtaacttagat |
2479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4725940 |
atatcaatctgcgcaacttagatactaacaagaagtaacttagat |
4725984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 898 - 1451
Target Start/End: Original strand, 4724392 - 4724958
Alignment:
| Q |
898 |
catagattactacaatattttagaactcatgttgtatccttgcttagtacagtagtgtgtaaccttttgtctctaatccaggccttctacttggattacc |
997 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
4724392 |
catagattactacaatattttagaactcatgttgtatccttgcttagtacagtattgtgtaaccttttgcctctaatccaggccttctgcttggattacc |
4724491 |
T |
|
| Q |
998 |
ggcagttaaaaaataaactatcatattaactaattactatatatatccaagattttaaattataaaatggccctaccactgcaaatttagccaaatctac |
1097 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
4724492 |
ggcagttaaaaaataaactatcatattaactaattactatatatatccaagattttaaattataaaatgaccctaccattgcaaatttagccaaatctac |
4724591 |
T |
|
| Q |
1098 |
ccctaaactcttgcaatctataaaatattaacctatttcaa----------ctaatatcataattcaaaaccttaa----gttatacctctctattgtct |
1183 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
4724592 |
ccctaaactcttgcaatctataaaatatta-cctatttcaaagatacaaaactaatatcataattcaaaaccttaattaagttatacctctctattgtct |
4724690 |
T |
|
| Q |
1184 |
ctctaacttgtttaatagagctgtgatcaaagcatctctattctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgt |
1283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4724691 |
ctctaacttgtttaatagagctgtgatcaaagcatctctcttctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgt |
4724790 |
T |
|
| Q |
1284 |
tccatcaatatcctctcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatcc |
1383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4724791 |
tccatcaatatcctctcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatcc |
4724890 |
T |
|
| Q |
1384 |
attgtgcttcaatttgcaattgttgtctcatgaactcatccaaaatttccttcaaattgcggaagaaa |
1451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4724891 |
attgtgcttcaatttgcaattgttgtctcatgaactcatccaaaatttccttcaaattgcggaagaaa |
4724958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 245 - 477
Target Start/End: Original strand, 4723787 - 4724014
Alignment:
| Q |
245 |
ttatccacttagtaatttccccatgatgtacctttggtttatatcaaggttcttactcaagaggtagtcacattttatagtgcacatttcacactatata |
344 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4723787 |
ttatccacttagtaattccccc-tgatgtacctttggtttatatcaaggttcttactcaaggggtagtcacattttatagtgcacatttcacactat--- |
4723882 |
T |
|
| Q |
345 |
tttattatcaaggttcacatcaatagtccaatttaaacaaatctcaatagttcatatatgtgaaacggtgataacgagccagattcacacaatagagaat |
444 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4723883 |
-ttattatcaaggttcacatcaatagtccaatttaaacaaatctcaatagttcatatatgtgaaaccgtgataacgagccagattcacacaatagagaat |
4723981 |
T |
|
| Q |
445 |
caaccacataatacattcaagtagggttcatgt |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
4723982 |
caaccacataatacattcaagtagggttcatgt |
4724014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-65
Query Start/End: Original strand, 637 - 848
Target Start/End: Original strand, 4724143 - 4724341
Alignment:
| Q |
637 |
tcgtcaaagtcattttattttatcaggtgcatagacatatcaaataaggtgcagtataaaattagttcgcatgtacgtcaaacacaatgaagtataaaaa |
736 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
4724143 |
tcgtcaaagtcatattattttatcaggtgcatagacatatcaaataaggtgcagtacaaaattagttcgcatgtacgtcaaacacaatgaagt------- |
4724235 |
T |
|
| Q |
737 |
gttgtcatttagaattatgtattctcctgtactattcgatcaagaatttactattttgcatacgaaacatatccttaaaataattaaaaagaaacctgca |
836 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4724236 |
------atgtagaattatggattctccattactattcgatcaagtatttactattttacaaacgaaacatatccttaaaataattaaaaagaaacttgca |
4724329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-62
Query Start/End: Original strand, 2461 - 2630
Target Start/End: Original strand, 4726005 - 4726176
Alignment:
| Q |
2461 |
aacaagaagtaacttagatttatt-tannnnnnngacaaagaagtaacttagatctatttcaaagattgatatttcttcacaattattttttcatacgca |
2559 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4726005 |
aacaagaagtaacttagatttattgtatttttttgacaaagaagtaacttagatctatttcaaagatcgatatttcttcacaattattttttcatacgca |
4726104 |
T |
|
| Q |
2560 |
tcaactccaaacaaaatatg-aaatacatgaataaaattttgaacataccttatagcgagtaacaaggtttt |
2630 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4726105 |
tcaacttcaaacaaaatatgaaaatatatgaataaaattttgaacataccttatagcgagtaacaaggtttt |
4726176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-67
Query Start/End: Original strand, 1216 - 1442
Target Start/End: Complemental strand, 25259613 - 25259387
Alignment:
| Q |
1216 |
catctctattctcagccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgttccatcaatatcctctcattctcaagcatttc |
1315 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
25259613 |
catctcttttttcagccctagcttcttctctaatccttctttgttcttccctttctctccatctttgttccatcattatcctctcattctccaatgcttc |
25259514 |
T |
|
| Q |
1316 |
catttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccattgtgcttcaatttgcaattgttgtctcatg |
1415 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||| ||||| |
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|
| T |
25259513 |
cattctttgtctccactccatctccttcaatctcctctcattctctcttgcttcaaatgcttccatccattgagcttccatttgcatttgttgcctcata |
25259414 |
T |
|
| Q |
1416 |
aactcatccaaaatttccttcaaattg |
1442 |
Q |
| |
|
||||| || | ||| |||||||||||| |
|
|
| T |
25259413 |
aactcctcaagaatctccttcaaattg |
25259387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-23
Query Start/End: Original strand, 1581 - 1713
Target Start/End: Complemental strand, 25259245 - 25259113
Alignment:
| Q |
1581 |
ttcttcttcgatccgtcttcagcttcagtccataacattctctgcatccttgctgtgaaaattgtttgaagttcattgtaaaatggaaattgttgtttca |
1680 |
Q |
| |
|
|||||||| ||||| |||| ||||||| ||||| |||||| ||||||||||| | ||||| | |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
25259245 |
ttcttctttgatcctccttctgcttcagcccatagcattctttgcatccttgcactaaaaatagcttgaagctcattgtaaaatggaaattgttgtctca |
25259146 |
T |
|
| Q |
1681 |
acacttctgtctccattgtttcacatcccttta |
1713 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
25259145 |
tggcttctacctccattgtttcacatcccttta |
25259113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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