View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_10 (Length: 486)
Name: NF11309_low_10
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 36930715 - 36930266
Alignment:
| Q |
20 |
ggttgctccacaccacacagctattgttgtaccttgttaatgttgttttccgtgattcagccatgcacgcattgaaggtccaggcatagcagctatccca |
119 |
Q |
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| T |
36930715 |
ggttgccccacaccacacagctattgttgtaccttgttaatgttgttttccgtcattcagccatgcacgcattgaaggtccaggcatagcagctatccca |
36930616 |
T |
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| Q |
120 |
ttcttatgaaattattttgatgtgaaataatatgttattcgatttttatatgtattttgtttatggttgtcccacactacactacacagctgttttccta |
219 |
Q |
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| T |
36930615 |
ttcttatgaaattattttgatgtgaaataatatgttattcgatttttatatgtatttagtttatggttgtcccacact-----acacagctgttttcctt |
36930521 |
T |
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| Q |
220 |
aatgatatcgtagctatcccactctcatgtgtgtgttcattctattccaaacatcatgatgcagaagcaatttgtcttg------------ggaatattt |
307 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36930520 |
aatggtatcgtagctatcccactctcatgtgtgtgttcattccattccaaacatcatgatgcagaagcaatttgtcttggctagtaaattaggaatattt |
36930421 |
T |
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| Q |
308 |
gcatatccaaacaaaaaagatggggttgggggctagcttttagaagaatttgacttgtcaatgcatgctgcactggcgtagcaatagctgga--acaccc |
405 |
Q |
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||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
36930420 |
gcagatccaaaaaaaaaa-----agatgggggctagcttttagaagaatttgacttgtcaatgcatgctgcactggcgtagcaatagctggaacacacgc |
36930326 |
T |
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| Q |
406 |
ttaaagactttggatttaagtgattagagttaagttggatcaatcaatagttttgcttag |
465 |
Q |
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| T |
36930325 |
tcaaagactttggatttaagtgattagagttaagttgaatcaatcaatagttttgcttag |
36930266 |
T |
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