View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_11 (Length: 475)
Name: NF11309_low_11
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 27761119 - 27760848
Alignment:
| Q |
17 |
aaatttaaatcgatggaatatatttaatttgagttttcactttgtttttattttacagccagaaaacaaagccctccttagtgacaatatctgcttcatc |
116 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |
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| T |
27761119 |
aaatttaaatcaatggaatatatttagtttgagttttcactttgtttttattttacacctagaaaacaaagcactccttagtgacaatatctgcttcatc |
27761020 |
T |
|
| Q |
117 |
tccatatgtggtaaatcaaagagctttccaatgcattaatatactataactttgatgtattttgtcgatcaaaacttacaagatcctttcttaagatctt |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27761019 |
tccatatgtggtaaatcaaagagatttccaatgcattaatatactataactttgatgtattttgtcgatcaaaacttacaagatcctttcttaagatctt |
27760920 |
T |
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| Q |
217 |
tccagtggctaactttggaatcttctctaaaaaggtcacacgccgcaaccttttgtatggtgcaacctagac |
288 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27760919 |
tccagtggctaactttggaatcttctctaaaaaagtcacacgccgcaaccttttgtatggtgcaacctagac |
27760848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 321 - 462
Target Start/End: Complemental strand, 27760815 - 27760673
Alignment:
| Q |
321 |
ccttcctacgcattttttacggtagtaatatatactcatcttgaatgaattataagtaaaagttaattaaattacgtatatcaagaaaagtaattgatta |
420 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27760815 |
ccttcctacgcattttttaccgtagtaatatatactcatcttgaatgaattataagtaaaagttaattaaattacgtatatcaagaaaagtaattgatta |
27760716 |
T |
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| Q |
421 |
aattttatctat-aaaattcaataaaagttaagtcttttgcct |
462 |
Q |
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| T |
27760715 |
aattttatctataaaaattcaataaaagtaaagtcttttgcct |
27760673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 136 - 284
Target Start/End: Complemental strand, 27770590 - 27770442
Alignment:
| Q |
136 |
agagctttccaatgcattaatatactataactttgatgtattttgtcgatcaaaacttacaagatcctttcttaagatctttccagtggctaactttgga |
235 |
Q |
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||||| |||||| ||| |||| | |||||||||||||| |||||||||| ||| |||| |||||||||||||| |||||||| |||| | |||||||| |
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| T |
27770590 |
agagccttccaaggcactaatttgttataactttgatgtcatttgtcgatctaaaattacgagatcctttcttaaaatctttcccgtgggtgactttgga |
27770491 |
T |
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| Q |
236 |
atcttctctaaaaaggtcacacgccgcaaccttttgtatggtgcaacct |
284 |
Q |
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|||||||||| ||| ||||| |||||||||||||||||||||||||||| |
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| T |
27770490 |
atcttctctataaaagtcactcgccgcaaccttttgtatggtgcaacct |
27770442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 140 - 288
Target Start/End: Complemental strand, 21640409 - 21640261
Alignment:
| Q |
140 |
ctttccaatgcattaatatactataactttgatgtattttgtcgatcaaaacttacaagatcctttcttaagatctttccagtggctaactttggaatct |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21640409 |
ctttccaatgcattaatatactataactttgatgtattttgtcgatcaaaacttacaagatcctttcttaagatctttccggtggctaactttggaatct |
21640310 |
T |
|
| Q |
240 |
tctctaaaaaggtcacacgccgcaaccttttgtatggtgcaacctagac |
288 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21640309 |
tctctaaaaaagtcacacgccgcaaccttttgtatggtgcaacctagac |
21640261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 321 - 462
Target Start/End: Complemental strand, 21636982 - 21636838
Alignment:
| Q |
321 |
ccttcctacgcattttttacggtagtaatatata--ctcatcttgaatgaattataagtaaaagttaattaaattacgtatatcaagaaaagtaattgat |
418 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21636982 |
ccttcctacgcattttttacggtagtaatatatatacttatcttgaatgaattataagtaaaagttaattaaattacgtatatcaagaaaagtaattgat |
21636883 |
T |
|
| Q |
419 |
taaattttatctat-aaaattcaataaaagttaagtcttttgcct |
462 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21636882 |
taaattttatctataaaaattcaataaaagttaagtcttttgcct |
21636838 |
T |
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