View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_14 (Length: 432)
Name: NF11309_low_14
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_14 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 51181952 - 51181528
Alignment:
| Q |
8 |
tgagatgaataaatcgactttagattctgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaac |
107 |
Q |
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| T |
51181952 |
tgagatgaataaatcgactttagattccgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaac |
51181853 |
T |
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| Q |
108 |
tgcagttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcagtgagaggctactagagctgctgcagatgcaattgcagcagaagcc |
207 |
Q |
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| T |
51181852 |
tgcagttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcagtgagaggctactagagctgctgcagatgcaattgcagcagaagcc |
51181753 |
T |
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| Q |
208 |
atgataggtttcttttggttgggattaggcttttcggatgatgctattgaagctgtgactgctgcaacagcggcagcaacaccaactacagatactgcgg |
307 |
Q |
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| T |
51181752 |
atggtagggttcttttggttgggattaggcttttcggatgatgctattgaagctgtgactgctgcaacagcggcagcaacaccaactacagatactgcgg |
51181653 |
T |
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| Q |
308 |
cgtgcaactgagcattatgagtcctgatttcctgttttttcctctccttctgatctttcaaccacctacccgtagtcctccctcttatcaagctcctgta |
407 |
Q |
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| T |
51181652 |
cgtgcaactgagcgttatgagtcctgatttcctgttttttcctctccttctgatctttcaaccacctccccgtagtcctccctcttatcaagctcctgta |
51181553 |
T |
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| Q |
408 |
aagctgatgagcgaaaatttgcaca |
432 |
Q |
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| T |
51181552 |
aagctgatgagcgaaaatttgcaca |
51181528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 14180717 - 14181139
Alignment:
| Q |
10 |
agatgaataaatcgactttagattctgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaactg |
109 |
Q |
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| T |
14180717 |
agatgaataaatcaactttaaattctgatacctgtggctgctccggctgttagagtcataatatctccattggtttttgcattaatagcagagtcaactg |
14180816 |
T |
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| Q |
110 |
cagttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcagtgagaggctactagagctgctgcagatgcaattgcagcagaagccat |
209 |
Q |
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| T |
14180817 |
ctgttatgatttggtcctgttcagctcccatatcttctgcaatctcaatgcaatgagaggctactagagctgtggcagatgcaattgcagcagaagccat |
14180916 |
T |
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| Q |
210 |
gataggtttcttttggttgggattaggcttttcggatgatgctattgaagctgtgactgctgcaacagcggcagcaacaccaactacagatactgcggcg |
309 |
Q |
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| T |
14180917 |
ggtagggttcttttggttgggattaggcttttcggatgatgctattgaagccgcaactgctgcaacagcggcagcaacaccaactacagatactgtggcg |
14181016 |
T |
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| Q |
310 |
tgcaactgagcattatgagtcctgatttcctgttttttcctctccttctgatctttcaaccacctacccgtagtcctccctcttatcaagctcctgtaaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14181017 |
tgcaactgagcattatgagtcctgatttcctgttttttcctctccttctgatctttcaaccacctacccgtagtcctccctcttattaagctcctgtaaa |
14181116 |
T |
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| Q |
410 |
gctgatgagcgaaaatttgcaca |
432 |
Q |
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| T |
14181117 |
gctgatgagcaaaaatttgcaca |
14181139 |
T |
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