View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_15 (Length: 429)
Name: NF11309_low_15
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 38118262 - 38117859
Alignment:
| Q |
17 |
acatcatgcggctaaaataagatatgataaatgagaagtcacacaatatatacatagaaaatctttaacatatgtataaaaaacacttaggnnnnnnnnn |
116 |
Q |
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| T |
38118262 |
acatcatgcggctaaaataagagatgataaatgagaagtcacacaatatatacatagaaaatctttaacatatgtataaaaaacacttaggaaaaaaaaa |
38118163 |
T |
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| Q |
117 |
----cacttagaaattcactattttattagaaaaagaatgtgggacattaaagtttgtcaaaacgtacaagtatttaaaattagatgcaatgtaaaataa |
212 |
Q |
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| T |
38118162 |
aaaacacttagaaattcactattttattagaaaaagaatgtgggacattaaagtttgtcaaaacgtacaagtatttaaaattagatgcaatgtaaaataa |
38118063 |
T |
|
| Q |
213 |
atagaatttgcacctttgcactgaacagaagctccattaatattacatgcttgtgaaagagatattgcaagaacttggttaataggtagttgaaaaattt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118062 |
atagaatttgcacctttgcactgaacagaagctccattaatattacatgcttgtgaaagagatattgcaagaacttggttaataggtagttgaaaaattt |
38117963 |
T |
|
| Q |
313 |
gagcattggaagacatcataaggcaagcacaatccatatttgtgctcatcaaagaccttaatgaatcgcaacaagtagttgatggtactaaaccattatt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38117962 |
gagcattggaagacatcataaggcaagcacaatccatatttgtgctcatcaaagaccttaatgaatcacaacaagtagttgatggtactaaaccattatt |
38117863 |
T |
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| Q |
413 |
agtg |
416 |
Q |
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|||| |
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| T |
38117862 |
agtg |
38117859 |
T |
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