View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_16 (Length: 408)
Name: NF11309_low_16
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 30744671 - 30745001
Alignment:
| Q |
1 |
aaaacaacgtgagaaaagtgacttgtagaactttaaaatagagaaaatatcaagaaaagaaaaattcacgagtttttaaaacatatgtaatcttttaatt |
100 |
Q |
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| T |
30744671 |
aaaacaacgtgagaaaagtgacttgtagaactttcaaaaagagaaaatatcaagaaaagaaaaattcacgagttgttaaaacatatgtaatcttttaatt |
30744770 |
T |
|
| Q |
101 |
tgattattcttaaaaatgtgctaaaacatatttaagtcagttaataaaacatgtgacataaaacatgtttgagataaattttaaagaagtaatctctatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
30744771 |
tgattattcttaaaaatgtgctaaaacatatttaagtcagttaataaaacatgtgacataaaacatgtttgagatgagttttaaagaagtaatctctatt |
30744870 |
T |
|
| Q |
201 |
taaaatgtagtgttttgtacataagtcatagttctaaaataccaaaattgttgtgttggatacggtggccgaggtttgaaccagactcctccatttatgt |
300 |
Q |
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| T |
30744871 |
taaaatgtagtgttttgtacataagtcacagttgtaaaat-----aattgttgtgttggatatggtggccgagatttgaaccagactcctatatttatgt |
30744965 |
T |
|
| Q |
301 |
gagtttccaataattcttgttatttcgtttatcaat |
336 |
Q |
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|||||| ||||| |||||||||||| |||||||||| |
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| T |
30744966 |
gagttttcaatagttcttgttattttgtttatcaat |
30745001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 158 - 336
Target Start/End: Complemental strand, 30728446 - 30728268
Alignment:
| Q |
158 |
ataaaacatgtttgagataaattttaaagaagtaatctctatttaaaatgtagtgttttgtacataagtcatagttctaaaataccaaaattgttgtgtt |
257 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
30728446 |
ataaaacatgtttgagatgagttttaaagaagtaatctctatttaaaatgtagtgttttgtacataagtcatagttctaaaatactaaaattgttatgtt |
30728347 |
T |
|
| Q |
258 |
ggatacggtggccgaggtttgaaccagactcctccatttatgtgagtttccaataattcttgttatttcgtttatcaat |
336 |
Q |
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| T |
30728346 |
ggatatggtggtcgaggtttgaactagactcctccatttacgtgagttttcaatagttcttgttatttcgtttatcaat |
30728268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 30733112 - 30732992
Alignment:
| Q |
18 |
gtgacttgtagaactttaaaatagagaaaatatcaagaaaagaaaaattcacgagtttttaaaacatatgtaatcttttaatttgattattcttaaaaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
30733112 |
gtgacttgtagaactttaaaatagagaaaatatcaagaaaagaaaaattcacgagtttttaaaacatatgtaatcttttgatttgattattctttaaaat |
30733013 |
T |
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| Q |
118 |
gtgctaaaacatatttaagtc |
138 |
Q |
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||||||||||||||||||||| |
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| T |
30733012 |
gtgctaaaacatatttaagtc |
30732992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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