View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309_low_18 (Length: 392)

Name: NF11309_low_18
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309_low_18
NF11309_low_18
[»] chr3 (8 HSPs)
chr3 (1-260)||(3025848-3026106)
chr3 (1-253)||(39870479-39870728)
chr3 (43-253)||(25529691-25529910)
chr3 (58-225)||(3026684-3026859)
chr3 (160-225)||(39871948-39872012)
chr3 (1-106)||(39872075-39872180)
chr3 (346-377)||(39870821-39870852)
chr3 (48-105)||(27320627-27320684)
[»] chr1 (14 HSPs)
chr1 (1-253)||(35381409-35381659)
chr1 (1-106)||(32847839-32847944)
chr1 (1-106)||(11431258-11431363)
chr1 (160-253)||(32849702-32849795)
chr1 (160-253)||(11429419-11429512)
chr1 (176-253)||(33753843-33753921)
chr1 (43-106)||(32849858-32849921)
chr1 (173-253)||(12096074-12096153)
chr1 (1-106)||(35382986-35383090)
chr1 (346-377)||(35381750-35381781)
chr1 (171-253)||(9419575-9419656)
chr1 (160-225)||(35382855-35382919)
chr1 (173-257)||(13223113-13223197)
chr1 (173-253)||(28253388-28253468)
[»] chr7 (8 HSPs)
chr7 (13-106)||(37547971-37548064)
chr7 (160-253)||(37556305-37556398)
chr7 (1-106)||(32429799-32429904)
chr7 (176-253)||(27160513-27160592)
chr7 (43-106)||(37556461-37556524)
chr7 (173-211)||(30045982-30046020)
chr7 (48-105)||(708082-708139)
chr7 (157-257)||(38758096-38758196)
[»] chr5 (5 HSPs)
chr5 (43-106)||(41281941-41282004)
chr5 (117-257)||(33489679-33489818)
chr5 (176-253)||(35929733-35929813)
chr5 (180-253)||(35931120-35931194)
chr5 (168-252)||(41282075-41282159)
[»] chr2 (2 HSPs)
chr2 (157-211)||(28167151-28167205)
chr2 (160-205)||(9261654-9261699)
[»] chr4 (1 HSPs)
chr4 (145-225)||(34538298-34538378)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 3025848 - 3026106
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3025848 taagttggcgcattttttgttttagtccatgtaagtttttttcttgcaaaacagcccttgtaattacaaaacgttttggaactcgttcttgccgtcaagt 3025947  T
Q  101 tccgtgnnnnnnnntgcattgcaggctaaaggacacctatatgacacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtattt 200  Q
    ||||||        |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3025948 tccgtgaaaaaaa-tgcattgctggctaaaggacacctatatgacacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtattt 3026046  T
Q  201 ttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaattcacac 260  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3026047 ttacatggtgaatataattaaaaaacacaatcgtcaatttttgaattttaaaattcacac 3026106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 39870479 - 39870728
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||||||| |||||||||||||| | ||||||       ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  39870479 taagttgacgcgttttttgttttagttcttgtaagtttttttcttgcgaaacagcccttgtaattacgaaacgttttggaactcgtccttgccgtcaaat 39870578  T
Q  101 tccgtgnnnnnnnntgcattgcaggctaaaggacacctatatgacacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtattt 200  Q
    ||||||        |||||||  |||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39870579 tccgtgaaaaaa--tgcattgttggctaacggacacctacgtggcacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtattt 39870676  T
Q  201 ttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    |||||| ||| || ||||||||||||| |||| ||||||||||||||||||||    
T  39870677 ttacataggg-atgtaattaaaaaacgtaatcatcaatttttgaattttaaaa 39870728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 25529910 - 25529691
Alignment:
Q  43 cttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgtgnnnnnnnntgcattgcaggctaaaggacacctatat 142  Q
    ||||| ||||| ||||||||||||| ||| |||||||||||| ||| ||||||||||||| |||        ||  |||| |||||| |||| ||||| |    
T  25529910 cttgcgaaacaacccttgtaattactaaatgttttggaactcatccctgccgtcaagttctgtg-aaaaaaatggtttgctggctaacggacgcctatgt 25529812  T
Q  143 gacacttgctgatatggcaactggt----------ttaattagagggactaaaatcaaaaacgtatttttacatggggaatataatt-aaaaaacgcaat 231  Q
    | ||| |||||||||||||||||||          |||| |||||||||||||| ||||||| ||||||||||  ||| || ||||| |||||| | ||     
T  25529811 ggcacatgctgatatggcaactggtgccaactgggttaagtagagggactaaaaccaaaaacatatttttacacaggg-atgtaattaaaaaaatgtaaa 25529713  T
Q  232 cgtcaatttttgaattttaaaa 253  Q
    | ||| ||||||||||||||||    
T  25529712 catcagtttttgaattttaaaa 25529691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 3026859 - 3026684
Alignment:
Q  58 ttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgtgnnnnnnnntgcattgcaggctaaaggacacctatatgacacttgctgatat 157  Q
    |||||||||| |||||||||||||||||||| ||| |||| ||||||||        |||||||| |||||| || | ||||  || ||| |||||||||    
T  3026859 ttgtaattaccaaacgttttggaactcgtccctgctgtcaggttccgtg-aaaaaaatgcattgctggctaacggtcgcctacgtggcacatgctgatat 3026761  T
Q  158 gg----------caactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaa 225  Q
    ||          ||||||| |||| |||||||||||||| ||||||| ||||||||||| ||| || |||||||||||    
T  3026760 ggcaacagttgccaactggattaagtagagggactaaaaccaaaaacatatttttacataggg-atgtaattaaaaaa 3026684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 39872012 - 39871948
Alignment:
Q  160 caactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaa 225  Q
    ||||||| |||| |||||||||||||| ||||||| ||||||||||| ||| || |||||||||||    
T  39872012 caactggattaagtagagggactaaaaccaaaaacatatttttacataggg-atgtaattaaaaaa 39871948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 39872180 - 39872075
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||||||||||||| |||| ||| | ||||||       ||||| ||| ||||||||||||||| | ||||||||||||| || | ||| |||| ||    
T  39872180 taagttgacgcatttttggtttaagttcgtgtaagtttttttcttgcgaaatagcccttgtaattaccatacgttttggaacttgttcctgctgtcaggt 39872081  T
Q  101 tccgtg 106  Q
    ||||||    
T  39872080 tccgtg 39872075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 377
Target Start/End: Original strand, 39870821 - 39870852
Alignment:
Q  346 aaaaccgctgctatcttctctaacaagagcac 377  Q
    ||||||||||||||||||||||||||||||||    
T  39870821 aaaaccgctgctatcttctctaacaagagcac 39870852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 27320684 - 27320627
Alignment:
Q  48 aaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgt 105  Q
    |||||| |||||||| ||||  ||| |||||||| ||||||||||||||| |||||||    
T  27320684 aaaacaacccttgtatttacgtaaccttttggaaatcgtccttgccgtcaggttccgt 27320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 35381409 - 35381659
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||| ||| ||||| ||||||||||||| |||       ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  35381409 taagttggcgcgtttttggttttagtccatgcaagttttttccttgcgaaacagccctcgtaattacaaaacgttttggaactcgtccttgccatcaagt 35381508  T
Q  101 tccgtgnnnnnnnntgcattgcaggctaaaggacacctatatgacacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtattt 200  Q
    ||||||        |||| ||| || ||| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  35381509 tccgtgaaaaaaa-tgcaatgctggataacggacacctacatgacatttgctgatatggcaactggtttaattagagagactaaaagcaaaaacgtattt 35381607  T
Q  201 ttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    |||||| ||| || ||||||||||| | |||| ||||||||||||||||||||    
T  35381608 ttacataggg-atgtaattaaaaaatgtaatcatcaatttttgaattttaaaa 35381659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 32847839 - 32847944
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||| ||| ||||| |||||||||| ||||||       ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  32847839 taagttggcgcgtttttggttttagtccctgtaagtttttttcttgcgaaacagcccttgtaattaccaaacgttttggaactcgtccctgccgtcaagt 32847938  T
Q  101 tccgtg 106  Q
    ||||||    
T  32847939 tccgtg 32847944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11431363 - 11431258
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||| ||| ||||| |||||||||| ||||||       ||||| ||||||||||||||||||| |||| ||||||||||||||| |||||||| ||    
T  11431363 taagttggcgcgtttttcgttttagtccctgtaagtttttttcttgcgaaacagcccttgtaattaccaaacattttggaactcgtccctgccgtcaggt 11431264  T
Q  101 tccgtg 106  Q
    ||||||    
T  11431263 tccgtg 11431258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 32849795 - 32849702
Alignment:
Q  160 caactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataatt-aaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||||  ||| || ||||| |||||||| || | ||||||||||||||||||||    
T  32849795 caactgggttaagtagagggactaaaaccaaaaacgtatttttacacaggg-atgtaattaaaaaaacgtaaacatcaatttttgaattttaaaa 32849702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 11429419 - 11429512
Alignment:
Q  160 caactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataatt-aaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||||  ||| || ||||| |||||| | || | ||||||||||||||||||||    
T  11429419 caactgggttaagtagagggactaaaaccaaaaacgtatttttacacaggg-atgtaattaaaaaaatgtaaacatcaatttttgaattttaaaa 11429512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 33753843 - 33753921
Alignment:
Q  176 agggactaaaatcaaaaacgtatttttacatggggaatataattaa--aaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    ||||||||||| |||||||| |||||||||| |||| || ||||||  |||||| |||| ||||||||||||||||||||    
T  33753843 agggactaaaaccaaaaacgcatttttacatagggacta-aattaagaaaaacgtaatcttcaatttttgaattttaaaa 33753921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 32849921 - 32849858
Alignment:
Q  43 cttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgtg 106  Q
    ||||| ||||| ||||||||||||| | |||||||||||||| ||| |||||||| ||||||||    
T  32849921 cttgcgaaacaacccttgtaattaccacacgttttggaactcatccctgccgtcaggttccgtg 32849858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 12096074 - 12096153
Alignment:
Q  173 tagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    ||||| |||||||| |||||||| ||||||||| |||||  | |||||||||||  |||  ||||||||||||||||||||    
T  12096074 tagagtgactaaaaccaaaaacgcatttttacacggggatga-aattaaaaaacttaattatcaatttttgaattttaaaa 12096153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 35383090 - 35382986
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||| ||| ||||| |||||||||| ||||||       ||||| ||||| || |||||||| | | |||||||||||||||||| |||||||| ||    
T  35383090 taagttggcgcgtttttggttttagtccctgtaagtttttttcttgcgaaacaacc-ttgtaatttccagacgttttggaactcgtccatgccgtcaggt 35382992  T
Q  101 tccgtg 106  Q
    ||||||    
T  35382991 tccgtg 35382986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 377
Target Start/End: Original strand, 35381750 - 35381781
Alignment:
Q  346 aaaaccgctgctatcttctctaacaagagcac 377  Q
    ||||||||||||||||||||||||||||||||    
T  35381750 aaaaccgctgctatcttctctaacaagagcac 35381781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 9419656 - 9419575
Alignment:
Q  171 attagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    |||||||||| ||||| |||||||| || ||||||| ||||  | |||||||||||| |||| |||| ||||||| |||||||    
T  9419656 attagagggaataaaaccaaaaacgaatatttacatagggatga-aattaaaaaacgtaatcatcaaattttgaaatttaaaa 9419575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 35382919 - 35382855
Alignment:
Q  160 caactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaa 225  Q
    ||||||| |||| |||||||||||||| |||| || ||||||||||| ||| || |||||||||||    
T  35382919 caactgggttaagtagagggactaaaaccaaatacatatttttacataggg-atgtaattaaaaaa 35382855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 13223113 - 13223197
Alignment:
Q  173 tagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaattca 257  Q
    |||||||||||||| |||||||| |||||||||| ||||  | | | |||||||  |||| |||| ||||| | |||||||||||    
T  13223113 tagagggactaaaaccaaaaacgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattca 13223197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 28253468 - 28253388
Alignment:
Q  173 tagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    |||||||||||||||||||||||||  ||||||| ||||  | | | |||||| | || | |||| |||||||||||||||    
T  28253468 tagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaaggtaaacatcaaattttgaattttaaaa 28253388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 37547971 - 37548064
Alignment:
Q  13 ttttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgtg 106  Q
    ||||| |||||||||| ||||||       ||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  37547971 tttttggttttagtccctgtaagtttttttcttgcgaaacagcccttgtaattaccaaacgttttggaactcgtccctgccatcaagttccgtg 37548064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 37556398 - 37556305
Alignment:
Q  160 caactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataatt-aaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||||  ||| || ||||| |||||||| || | ||||||||||||||||||||    
T  37556398 caactgggttaagtagagggactaaaaccaaaaacgtatttttacacaggg-atgtaattaaaaaaacgtaaacatcaatttttgaattttaaaa 37556305  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32429904 - 32429799
Alignment:
Q  1 taagttgacgcattttttgttttagtccatgtaagnnnnnnncttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagt 100  Q
    ||||||| ||| ||||| |||||||||| ||||||       ||||| ||| | ||||||||||||| |||||||||||||||||||| ||||| || ||    
T  32429904 taagttggcgcgtttttggttttagtccctgtaagtttttttcttgcgaaataacccttgtaattaccaaacgttttggaactcgtccctgccgccaggt 32429805  T
Q  101 tccgtg 106  Q
    ||||||    
T  32429804 tccgtg 32429799  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 27160513 - 27160592
Alignment:
Q  176 agggactaaaatcaaaaacgtatttttacatggggaatataattaaaa---aacgcaatcgtcaatttttgaattttaaaa 253  Q
    |||||||||||||||||||| |||||||||| |||| || ||||||||   |||| |||| ||||||||||||||||||||    
T  27160513 agggactaaaatcaaaaacgcatttttacatagggacta-aattaaaaaataacgtaatcttcaatttttgaattttaaaa 27160592  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 37556524 - 37556461
Alignment:
Q  43 cttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgtg 106  Q
    ||||| ||||| ||||||||||||| | |||||||||||||| ||| |||||||| ||||||||    
T  37556524 cttgcgaaacaacccttgtaattaccacacgttttggaactcatccctgccgtcaggttccgtg 37556461  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 30045982 - 30046020
Alignment:
Q  173 tagagggactaaaatcaaaaacgtatttttacatgggga 211  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  30045982 tagagggactaaaaccaaaaacgtatttttacataggga 30046020  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 708139 - 708082
Alignment:
Q  48 aaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgt 105  Q
    |||||| ||||||||||| | |||| |||||||| |||||| |||||||| |||||||    
T  708139 aaaacaacccttgtaatttcgaaaccttttggaaatcgtccctgccgtcaggttccgt 708082  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 38758196 - 38758096
Alignment:
Q  157 tggcaactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaacgcaatcgtcaatttttgaattttaaaattc 256  Q
    ||||||||||| | | |||||||||||||| |||||||  |||||||||| ||||  | | | |||||||  |||| |||| ||||| | ||||||||||    
T  38758196 tggcaactggtcttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattc 38758097  T
Q  257 a 257  Q
    |    
T  38758096 a 38758096  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 41281941 - 41282004
Alignment:
Q  43 cttgcaaaacagcccttgtaattacaaaacgttttggaactcgtccttgccgtcaagttccgtg 106  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  41281941 cttgcgaaacaacccttgtaattaccaaacgttttggaactcgtccctgccgtcaggttccgtg 41282004  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 257
Target Start/End: Complemental strand, 33489818 - 33489679
Alignment:
Q  117 cattgcaggctaaaggacacctatatgacacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatata 216  Q
    |||||| |||||| |||| | ||| || |||||| |||  ||||||||||| | | |||||||||||| | |||||||| |||||||||| ||||    |    
T  33489818 cattgctggctaacggacgcatatgtggcacttgatgagttggcaactggtcttagtagagggactaataccaaaaacgcatttttacatagggacgg-a 33489720  T
Q  217 attaaaaaacgcaatcgtcaatttttgaattttaaaattca 257  Q
    ||||||||||  |||| |||| ||||||| |||||||||||    
T  33489719 attaaaaaacataatcatcaaattttgaaatttaaaattca 33489679  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 35929733 - 35929813
Alignment:
Q  176 agggactaaaatcaaaaacgtatttttacatggggaata---taattaaaaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    |||||||||||||||||||| |||||||||| | || ||   |||  |||||||| |||| ||||||||||||||||||||    
T  35929733 agggactaaaatcaaaaacgcatttttacatagagactaaattaaaaaaaaaacgtaatcttcaatttttgaattttaaaa 35929813  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 35931194 - 35931120
Alignment:
Q  180 actaaaatcaaaaacgtatttttacatggggaatataattaa--aaaacgcaatcgtcaatttttgaattttaaaa 253  Q
    ||||||| |||||||| |||||||||| |||| || ||||||  |||||| |||| ||||||||||||||||||||    
T  35931194 actaaaaccaaaaacgcatttttacatagggacta-aattaagaaaaacgtaatcttcaatttttgaattttaaaa 35931120  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 41282075 - 41282159
Alignment:
Q  168 ttaattagagggactaaaatcaaaaacgtatttttacatggggaatataatt-aaaaaacgcaatcgtcaatttttgaattttaaa 252  Q
    |||| || ||||||||||| ||||||||||||||||||  ||| || ||||| |||||||  || | |||||||||||||||||||    
T  41282075 ttaagtacagggactaaaaccaaaaacgtatttttacacaggg-atgtaattaaaaaaacttaaacatcaatttttgaattttaaa 41282159  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 28167205 - 28167151
Alignment:
Q  157 tggcaactggtttaattagagggactaaaatcaaaaacgtatttttacatgggga 211  Q
    ||||||||||| | | ||||||||||||||||||||||| |||||||||| ||||    
T  28167205 tggcaactggtcttagtagagggactaaaatcaaaaacgcatttttacataggga 28167151  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 9261654 - 9261699
Alignment:
Q  160 caactggtttaattagagggactaaaatcaaaaacgtatttttaca 205  Q
    |||||||| ||| |||| ||||||||| ||||||||||||||||||    
T  9261654 caactggtataagtagacggactaaaaccaaaaacgtatttttaca 9261699  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 34538298 - 34538378
Alignment:
Q  145 cacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtatttttacatggggaatataattaaaaaa 225  Q
    |||||| ||| |||||||||| | | | ||||||||||||||  ||||||| |||||||||| |||| |  ||||||||||    
T  34538298 cacttgatgagatggcaactgctcttagtagagggactaaaacgaaaaacgcatttttacatagggactgaaattaaaaaa 34538378  T

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