View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_19 (Length: 378)
Name: NF11309_low_19
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 362
Target Start/End: Complemental strand, 42789054 - 42788698
Alignment:
| Q |
6 |
agagagatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccactttt |
105 |
Q |
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| T |
42789054 |
agagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccactttt |
42788955 |
T |
|
| Q |
106 |
gaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788954 |
gaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaa |
42788855 |
T |
|
| Q |
206 |
cctggttggtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctagccgaacagggacaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42788854 |
cctggttggtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctaaccgaacagggacaa |
42788755 |
T |
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| Q |
306 |
agaagatgtaaggaaagaatagtggcaagctagtatttgacaaattttattactatt |
362 |
Q |
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| T |
42788754 |
agaagatgtaaggaaagaatagtggcaagctagtatttgacaaattttattactatt |
42788698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 362
Target Start/End: Complemental strand, 42798592 - 42798236
Alignment:
| Q |
6 |
agagagatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccactttt |
105 |
Q |
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| T |
42798592 |
agagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccactttt |
42798493 |
T |
|
| Q |
106 |
gaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaa |
205 |
Q |
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| T |
42798492 |
gaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaa |
42798393 |
T |
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| Q |
206 |
cctggttggtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctagccgaacagggacaa |
305 |
Q |
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| T |
42798392 |
cctggttggtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatggctaaccgaacagggacaa |
42798293 |
T |
|
| Q |
306 |
agaagatgtaaggaaagaatagtggcaagctagtatttgacaaattttattactatt |
362 |
Q |
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| T |
42798292 |
agaagatgtaaggaaagaatagtggcaagctagtatttgacaaattttattactatt |
42798236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 34566721 - 34566447
Alignment:
| Q |
12 |
atgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaagga |
111 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||| |||||||||||||||||| |||||||| | ||| | | |
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| T |
34566721 |
atgaaatgatcattgaaggtttgaaaagtgctggaattgaatgcttgaaaggtaatgcagggttgttttgttggatgaatatgagtccaatgttgga-aa |
34566623 |
T |
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| Q |
112 |
gtca-actaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtgttcttgtcattgtgatcaacctgg |
210 |
Q |
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|| | || | |||||||||||| | ||||||||| ||||||||||| | || | ||||| || || |||||||||||||||||| |||| || |
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| T |
34566622 |
gtaatacaagagaaggtgaattgaagctttggaatgagattttgaatgaagttaagcttaatatttcaccagggtgttcttgtcattgttccgaacccgg |
34566523 |
T |
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| Q |
211 |
ttggtttagagtctgctttgctaatatgagtgaacacactttggaagttgcattgaaaagaatacgtaacttcatg |
286 |
Q |
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||||||||| || || ||||| |||||||||||| | || | ||| ||||| | |||||||||||| | |||||| |
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| T |
34566522 |
ttggtttagggtttgttttgcaaatatgagtgaagaaacacttgaacttgcactcaaaagaatacgtgatttcatg |
34566447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 47828714 - 47828785
Alignment:
| Q |
167 |
ttgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
238 |
Q |
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|||||||||||||| || | ||||||||||||| | ||||||| |||||||| | ||||||||||||||| |
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| T |
47828714 |
ttgaatatatctcctggatcttcttgtcattgttctgaacctgggtggtttaggatttgctttgctaatatg |
47828785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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