View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_20 (Length: 370)
Name: NF11309_low_20
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 363
Target Start/End: Original strand, 31200821 - 31201164
Alignment:
| Q |
22 |
caattgggtcgtatgctttgtcaagctgctaatcgggatgttatcacatggttggaagctttgatgacatcgccacagtacaggaatttgcaaagaggtt |
121 |
Q |
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| T |
31200821 |
caattgggtcgtatgctttgtcaagctgcgaatcgg-atgttatcacatggttggaagctttgatgacatcgccacagtacaggaatttgcaaagaggtt |
31200919 |
T |
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| Q |
122 |
cattcaagttacttcgaatcatgtcatttattgactcatattctctttatgtctgtatcacttaattgaaataatgtgtgtgcgcgttgtttgtaatggt |
221 |
Q |
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| T |
31200920 |
cattcaagttacttcgaatcatgtcatttgttgactcatattctctttatgtctgtatcacttaattgaaataatgtgtgcgcgcgttgtttgtaatggt |
31201019 |
T |
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| Q |
222 |
aacgtttgaaattgagcatgtcgatgttactacattggaaaaactcgagaaacaaggaattgactgccaacctaaagcct---ctatacgaattattcag |
318 |
Q |
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| T |
31201020 |
aacgtttgaaattgagcatgtcgatgttactacattggaaaaactcgagaaacaaggaattgactgccaacctaaagcctctactatacgaattattcag |
31201119 |
T |
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| Q |
319 |
gtattatattgatggatgcaaacttcttttatctgtttcttctct |
363 |
Q |
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| T |
31201120 |
gtattatattgatggatgcaaacttcttttatctgtttcttctct |
31201164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 35857168 - 35857028
Alignment:
| Q |
64 |
atcacatggttggaagctttgatgacatcgccacagtacaggaatttgcaaagaggttcattcaagttacttcgaatcatgtcatttattgactcatatt |
163 |
Q |
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| T |
35857168 |
atcacatggttggaagctttgatgacagcgccacagtacaggaatttgcaaagaggttcgttcatgttactttgaattatgtcattta---actcatatt |
35857072 |
T |
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| Q |
164 |
ctctt----tatgtctgtatcacttaattgaaataatgtgtgtg |
203 |
Q |
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| T |
35857071 |
ctctttatgtatgtatgtatcacttaattgaaataatgtgtgtg |
35857028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 221 - 329
Target Start/End: Complemental strand, 35856981 - 35856870
Alignment:
| Q |
221 |
taacgtttgaaattgagcatgtcgatgttactacattggaaaaactcgagaaacaaggaattgactgccaacctaaagcct---ctatacgaattattca |
317 |
Q |
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| T |
35856981 |
taacatttgaaattgagcacgtcgatgttactacattggaaaaacttgagaaacaaggtgttgactgccaacctaaagcctctactatacgaattattca |
35856882 |
T |
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| Q |
318 |
ggtattatattg |
329 |
Q |
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| T |
35856881 |
ggtattatattg |
35856870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 35856099 - 35856063
Alignment:
| Q |
327 |
ttgatggatgcaaacttcttttatctgtttcttctct |
363 |
Q |
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| T |
35856099 |
ttgatggacgcaaacttcttttatttgtttcttctct |
35856063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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