View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309_low_24 (Length: 322)
Name: NF11309_low_24
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_24 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 6305904 - 6306208
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6305904 |
gaaaatgccaaggacaacacctggcatataacacaagggttttccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctact |
6306003 |
T |
|
| Q |
118 |
acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306004 |
acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct |
6306103 |
T |
|
| Q |
218 |
ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306104 |
ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt |
6306203 |
T |
|
| Q |
318 |
ttttc |
322 |
Q |
| |
|
||||| |
|
|
| T |
6306204 |
ttttc |
6306208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 27 - 322
Target Start/End: Original strand, 32926364 - 32926659
Alignment:
| Q |
27 |
aaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacatgcagg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
32926364 |
aaggacaacacctggcatataacacaagggtttgccctcacaaaactcctcacttattgcaaggtgggaaattgaaattcaagaatctgttgcatgcagg |
32926463 |
T |
|
| Q |
127 |
cttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatctctgcattgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32926464 |
cttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgtcagggaaagcccctgggatgggaaaaaaggtgatgaatctctgcattgt |
32926563 |
T |
|
| Q |
227 |
ttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32926564 |
ttcctgttgatttgacaaggctctgaaaagcctgtccggtccggttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttc |
32926659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 20856657 - 20856725
Alignment:
| Q |
254 |
aagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20856657 |
aagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttc |
20856725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 20850280 - 20850346
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttatt |
84 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20850280 |
gaaaatgcgaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttatt |
20850346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 2399594 - 2399290
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2399594 |
gaaaatgccaaggacaacacctggcatatgatacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct |
2399495 |
T |
|
| Q |
118 |
acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2399494 |
acatggaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaatgtgatgaatct |
2399395 |
T |
|
| Q |
218 |
ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2399394 |
ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt |
2399295 |
T |
|
| Q |
318 |
ttttc |
322 |
Q |
| |
|
||||| |
|
|
| T |
2399294 |
ttttc |
2399290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 45878092 - 45877791
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcata-taacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45878092 |
gaaaatgccaaggacaacacctggcataataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatttgc |
45877993 |
T |
|
| Q |
117 |
tacatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatc |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45877992 |
tgcatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaactgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatc |
45877893 |
T |
|
| Q |
217 |
tctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45877892 |
tctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggct |
45877793 |
T |
|
| Q |
317 |
tt |
318 |
Q |
| |
|
|| |
|
|
| T |
45877792 |
tt |
45877791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 31519964 - 31520268
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31519964 |
gaaaatgccaaggacaacacttggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagagtctgct |
31520063 |
T |
|
| Q |
118 |
acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31520064 |
gcatgcaggcttgaagtgactaaagtaggtggctgtcaggaaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct |
31520163 |
T |
|
| Q |
218 |
ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31520164 |
ctgcattgtttcctgttgatttgacaaggctttgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt |
31520263 |
T |
|
| Q |
318 |
ttttc |
322 |
Q |
| |
|
||||| |
|
|
| T |
31520264 |
ttttc |
31520268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 17311448 - 17311144
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| || | |
|
|
| T |
17311448 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaaaccctcacttattgcaaagtgggaaattaaaattcaagaatatggt |
17311349 |
T |
|
| Q |
118 |
acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
17311348 |
gcatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaatcgagggaatatgctagggaaaacccctgggataggaaaaaaggtgatgaatct |
17311249 |
T |
|
| Q |
218 |
ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17311248 |
ctgctttgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaataccccttgtttattgcgtgaatccctggctt |
17311149 |
T |
|
| Q |
318 |
ttttc |
322 |
Q |
| |
|
||||| |
|
|
| T |
17311148 |
ttttc |
17311144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 36 - 322
Target Start/End: Original strand, 26172373 - 26172659
Alignment:
| Q |
36 |
acctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacatgcaggcttgaagtg |
135 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26172373 |
acctggcatataacacaagggtttgtcctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctgcatgcaggcttgaagtg |
26172472 |
T |
|
| Q |
136 |
actaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatctctgcattgtttcctgttg |
235 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
26172473 |
actaaagtaggtggctgtcaggaaaaaaccaagggaatatgccaaggaaagcccttgggatgggaaaaaaggtgatgaatctctgctttgtttcttgttg |
26172572 |
T |
|
| Q |
236 |
atttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttc |
322 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26172573 |
atttgacaaggctctgaaaagcatgtccggtccagttgagacaggggcaatacccctcgtttattgcatgaatccctggcttttttc |
26172659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 7916278 - 7916407
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7916278 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaaccc-tcacttattgcaaggtgggaaattgaaattcaagaatctgct |
7916376 |
T |
|
| Q |
118 |
acatgcaggcttgaagtgactaaagtaggtg |
148 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
7916377 |
gcatgcagacttgaagtgactaaagtaggtg |
7916407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 7916403 - 7916520
Alignment:
| Q |
205 |
aggtgatgaatctctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7916403 |
aggtgatgaatctctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccaattgagacaggggcaatacccctcgtttattgcgt |
7916502 |
T |
|
| Q |
305 |
gaatccctggcttttttc |
322 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7916503 |
gaatccctggcttttttc |
7916520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 17737948 - 17737993
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccc |
63 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
17737948 |
gaaaatgccaacgataacctctggcatataacacaagggtttgccc |
17737993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 5322712 - 5322761
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcac |
67 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5322712 |
gaaaatgccaaggataacccctggcatataacacaagggtttgccctcac |
5322761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 35631429 - 35631380
Alignment:
| Q |
18 |
gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcac |
67 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
35631429 |
gaaaatgtcaaggataacacctggcatataacagaagggtttgccctcac |
35631380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University