View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_26 (Length: 282)
Name: NF11309_low_26
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 38623303 - 38623577
Alignment:
| Q |
1 |
gaagaatgaaatgagttatacttatatgatagaagatgacctgaagagtgagcagtagaggaagctgatcctaacaatgttcgtttgattctcaagtgct |
100 |
Q |
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| T |
38623303 |
gaagaatgaaatgagttatacttatatgatagaagatgacctgaagagtgagcagtagaggaagctgatcctaacaatgttcgtttgattctcaagtgct |
38623402 |
T |
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| Q |
101 |
gcaccataatcttcagttgtgtagtacagtactactatgatgtaataatactctgttcctagtcccttgtagaagaactaaagttttatcgtgttttcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38623403 |
gcaccataatcttcagttgtgtagtacagtactactatgatgtaataataccctgttcctagtcccttgtagaagaactaaagttttatcgtg-tttcag |
38623501 |
T |
|
| Q |
201 |
tgccgtatgtatccaaacgcgaaacaaaacagacctagtgttctattatcaaatgtggatgttttctcctacttgc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38623502 |
tgccgtatgtatccaaacgcgaaacaaaacagacctggtgttctattatcaaatgtggatgttttctcctacttgc |
38623577 |
T |
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