View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_32 (Length: 253)
Name: NF11309_low_32
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_32 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30272810 - 30273044
Alignment:
| Q |
1 |
tagttttgtaataaaacaacactttcatttgtgtgtatagaataattagaaaatatgtcctgtagtctataatgccataggaaggaggtagaagaatcat |
100 |
Q |
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| T |
30272810 |
tagttttgtgataaaacaacactttcatttgtgtgtatagaataattagaaaatatgtcctatagtctataatgccataggaaggaggtagaagaatcat |
30272909 |
T |
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| Q |
101 |
caggaagattacaatgaagaaggacataagagagggagagagccatagggaggacccttgaaattgtttattgtttcaagtggtttcttccaaattgata |
200 |
Q |
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| T |
30272910 |
caggaagattacaatgaagaaggacat-agagagggagagagccatagggaggaccctcgaaattgtttgttgtttcaattggtttcttccaaattgata |
30273008 |
T |
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| Q |
201 |
atttcagtttctttgttctgcaccttcatgtcatct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30273009 |
atttcagtttctttgttctgcaccttcatgtcatct |
30273044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 4670 - 4547
Alignment:
| Q |
1 |
tagttttgtaataaaacaacactttcatttgtgtgtatagaataattagaaaatatgtcctgtagtctataatgccataggaaggaggtagaagaatcat |
100 |
Q |
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|||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||| |||||||| |
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| T |
4670 |
tagttttgtattaaaacaacacttttaattgtgtgtatagaataattagaaa-tatgtactatagtctaaaatgccataggaaggaggtagtagaatcat |
4572 |
T |
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| Q |
101 |
caggaagattacaatgaagaaggac |
125 |
Q |
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| T |
4571 |
caggaaaattacaatgaagagggac |
4547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 12089163 - 12089212
Alignment:
| Q |
187 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatct |
236 |
Q |
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||||||||||||||||||||||||||||||| || || ||||||| |||| |
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| T |
12089163 |
cttccaaattgataatttcagtttctttgttttgtacattcatgttatct |
12089212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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