View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309_low_33 (Length: 249)

Name: NF11309_low_33
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309_low_33
NF11309_low_33
[»] chr6 (7 HSPs)
chr6 (1-140)||(31520340-31520479)
chr6 (23-108)||(17308872-17308957)
chr6 (76-140)||(4968776-4968840)
chr6 (76-140)||(13508043-13508107)
chr6 (81-134)||(28679580-28679633)
chr6 (76-134)||(4448740-4448798)
chr6 (211-239)||(17308728-17308756)
[»] chr7 (7 HSPs)
chr7 (23-140)||(7916614-7916731)
chr7 (1-108)||(26172731-26172838)
chr7 (62-140)||(17738364-17738442)
chr7 (76-140)||(38705441-38705505)
chr7 (81-140)||(21780549-21780608)
chr7 (98-136)||(26172841-26172879)
chr7 (81-134)||(18341524-18341577)
[»] chr1 (3 HSPs)
chr1 (1-120)||(2399099-2399218)
chr1 (23-108)||(45877612-45877693)
chr1 (70-140)||(20338452-20338522)
[»] chr3 (3 HSPs)
chr3 (23-120)||(6306302-6306399)
chr3 (23-136)||(32926753-32926865)
chr3 (23-140)||(20856819-20856949)
[»] scaffold0878 (1 HSPs)
scaffold0878 (30-140)||(1316-1439)
[»] chr8 (3 HSPs)
chr8 (60-133)||(35068914-35068986)
chr8 (76-140)||(9763711-9763775)
chr8 (95-136)||(35630725-35630766)
[»] scaffold0005 (1 HSPs)
scaffold0005 (64-140)||(60180-60256)
[»] chr4 (3 HSPs)
chr4 (64-140)||(14779474-14779550)
chr4 (76-140)||(38972897-38972961)
chr4 (95-136)||(5323086-5323127)
[»] scaffold0260 (1 HSPs)
scaffold0260 (70-140)||(775-845)
[»] chr5 (2 HSPs)
chr5 (76-140)||(33891421-33891485)
chr5 (79-140)||(37574418-37574479)
[»] scaffold1414 (1 HSPs)
scaffold1414 (81-134)||(1678-1731)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 31520340 - 31520479
Alignment:
Q  1 cggataggccgtggcnnnnnnngctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaa 100  Q
    |||||||||||||||       |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31520340 cggataggccgtggctttttttgctctctatataaatccatgcaccgatcatgtaacagacttcacaacacttataaaattttcttcacataaaacacaa 31520439  T
Q  101 cacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31520440 cacattcaacatacttcatttatttggtaaaaaatacttc 31520479  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 17308957 - 17308872
Alignment:
Q  23 gctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattca 108  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17308957 gctccctatataaatccatgcaccgatcatgtaatagacttcacaacacttataaaattttctccacataaaacacaacacattca 17308872  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 4968776 - 4968840
Alignment:
Q  76 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    |||||||||||||| |||||||||| || |||| |  ||||||||||||||||||||||| ||||    
T  4968776 aaaattttcttcacttaaaacacaaaaccttcatcgaacttcatttatttggtaaaaaattcttc 4968840  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 13508043 - 13508107
Alignment:
Q  76 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  13508043 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 13508107  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 28679580 - 28679633
Alignment:
Q  81 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 134  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||    
T  28679580 tttcttcacttaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaa 28679633  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 4448798 - 4448740
Alignment:
Q  76 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 134  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||    
T  4448798 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaa 4448740  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 17308756 - 17308728
Alignment:
Q  211 gcagctgtgttacttatctgcctcctatg 239  Q
    |||||||||||||||||||||||||||||    
T  17308756 gcagctgtgttacttatctgcctcctatg 17308728  T

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Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 7916614 - 7916731
Alignment:
Q  23 gctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcattta 122  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7916614 gctccctatataaatccatgcaccgatcatgtaacagacttcacaacacttataaaattttcttcacataaaacataacacattcaacatacttcattta 7916713  T
Q  123 tttggtaaaaaatacttc 140  Q
    ||||||||||||||||||    
T  7916714 tttggtaaaaaatacttc 7916731  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26172731 - 26172838
Alignment:
Q  1 cggataggccgtggcnnnnnnngctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaa 100  Q
    |||||||||||||||       ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26172731 cggataggccgtggctttttttgctccctatataaattcatgcaccgatcatgtaacaaacttcacaacacttataaaattttcttcacataaaacacaa 26172830  T
Q  101 cacattca 108  Q
    ||||||||    
T  26172831 cacattca 26172838  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 17738364 - 17738442
Alignment:
Q  62 ttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||| || |||||||||| |||||||||||| ||||    
T  17738364 ttcacaacacttagaaaaatttcttcccataaaacacaacacattcatcaaacttcatttacttggtaaaaaattcttc 17738442  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 38705505 - 38705441
Alignment:
Q  76 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  38705505 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 38705441  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 21780608 - 21780549
Alignment:
Q  81 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||| ||||    
T  21780608 tttcttcacctaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaattcttc 21780549  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 26172841 - 26172879
Alignment:
Q  98 caacacattcaacatacttcatttatttggtaaaaaata 136  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26172841 caacacattcaacaaacttcatttatttggtaaaaaata 26172879  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 18341577 - 18341524
Alignment:
Q  81 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 134  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||    
T  18341577 tttcttcacttaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaa 18341524  T

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Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 2399218 - 2399099
Alignment:
Q  1 cggataggccgtggcnnnnnnngctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaa 100  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2399218 cggataggccgtggctttttttgctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaa 2399119  T
Q  101 cacattcaacatacttcatt 120  Q
    ||||||||||||||||||||    
T  2399118 cacattcaacatacttcatt 2399099  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 45877693 - 45877612
Alignment:
Q  23 gctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattca 108  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||||||     |||||||||||||||||||||||||||||    
T  45877693 gctccctatataaatctatgcaccgatcatgtaacaaacttcacaacacttag----ttttcttcacataaaacacaacacattca 45877612  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 20338522 - 20338452
Alignment:
Q  70 acttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||| |||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| ||||    
T  20338522 acttagaaaattttcttcacttaaaacacaacaccttcatcaaacttcatttatttggtaaaaaattcttc 20338452  T

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Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 6306302 - 6306399
Alignment:
Q  23 gctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6306302 gctccctatataaatccatgcaccgatcctgtaacagacttcacaactcttataaaattttcttcacataaaacacaacacattcaacatacttcatt 6306399  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 32926753 - 32926865
Alignment:
Q  23 gctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcattta 122  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||    
T  32926753 gctccctatataaatccatgcaccgatcatgtaacatacttcacaacacttataaaattttcttcacat-tcactcaacacattcaacatacttcattta 32926851  T
Q  123 tttggtaaaaaata 136  Q
    ||||||||||||||    
T  32926852 tttggtaaaaaata 32926865  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 20856819 - 20856949
Alignment:
Q  23 gctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacaca-------------acacattcaa 109  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||             ||||||||||    
T  20856819 gctccctatataaatccatgcaccgatcatgtaacagacttcagaacacttataaaattttcttcacataaaacacaacacattcactccacacattcaa 20856918  T
Q  110 catacttcatttatttggtaaaaaatacttc 140  Q
    |||||||||||||||||||||||||||||||    
T  20856919 catacttcatttatttggtaaaaaatacttc 20856949  T

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Target: scaffold0878 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 1439 - 1316
Alignment:
Q  30 atataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacaca-------------ttcaacatactt 116  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||             ||||||||||||    
T  1439 atataaatccatgcaccgatcatgtaacagacttcacaacgcttataaaattttcttcgcataaaacacaacacattcactcaacacattcaacatactt 1340  T
Q  117 catttatttggtaaaaaatacttc 140  Q
    ||||||||||||||||||||||||    
T  1339 catttatttggtaaaaaatacttc 1316  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 35068986 - 35068914
Alignment:
Q  60 acttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaa 133  Q
    |||||| |||||||| |||||||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  35068986 acttcagaacacttagaaaattttcttcacataaaacacaacac-ttcatcaaacttcatttatttggtaaaaa 35068914  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 9763711 - 9763775
Alignment:
Q  76 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    |||||||||||||| |||| ||||| || |||| || ||||||||||||||||||||||| ||||    
T  9763711 aaaattttcttcacctaaaccacaaaaccttcatcaaacttcatttatttggtaaaaaattcttc 9763775  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 35630766 - 35630725
Alignment:
Q  95 acacaacacattcaacatacttcatttatttggtaaaaaata 136  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  35630766 acacaacacattcatcaaacttcatttatttggtaaaaaata 35630725  T

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Target: scaffold0005 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 60256 - 60180
Alignment:
Q  64 cacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||    
T  60256 cacaagacttagaaaatttccttcacataaaacacaacatattcatcaaacttcatttatttggtaaaaaattcttc 60180  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 14779474 - 14779550
Alignment:
Q  64 cacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||    
T  14779474 cacaagacttagaaaatttccttcacataaaacacaacatattcatcaaacttcatttatttggtaaaaaattcttc 14779550  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 38972961 - 38972897
Alignment:
Q  76 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  38972961 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 38972897  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 5323086 - 5323127
Alignment:
Q  95 acacaacacattcaacatacttcatttatttggtaaaaaata 136  Q
    |||||||||||||| || |||||||||||||| |||||||||    
T  5323086 acacaacacattcatcaaacttcatttatttgataaaaaata 5323127  T

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Target: scaffold0260 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 845 - 775
Alignment:
Q  70 acttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||| |||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| ||||    
T  845 acttagaaaattttcttcacttaaaacacaacaccttcatcaaacttcatttatttggtaaaaaattcttc 775  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 33891485 - 33891421
Alignment:
Q  76 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  33891485 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 33891421  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 37574479 - 37574418
Alignment:
Q  79 attttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 140  Q
    ||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  37574479 attttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 37574418  T

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Target: scaffold1414 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 1678 - 1731
Alignment:
Q  81 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 134  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||    
T  1678 tttcttcacctaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaa 1731  T

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