View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_4 (Length: 672)
Name: NF11309_low_4
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 61 - 655
Target Start/End: Original strand, 38791860 - 38792453
Alignment:
| Q |
61 |
tgaacattattttctctaggtccacgaaagtaaccctttcattttcatttcggtcacatctaataataagttggttattgttgactgttgcgtggtatgc |
160 |
Q |
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| T |
38791860 |
tgaacattattttctctaggtccacgaaagtaaccctttcattttcatttcg-tcacatctaataataagttggttattgttgactgttgcgtggtatgc |
38791958 |
T |
|
| Q |
161 |
tgttccttcggttgaaaactaccccttcattaccagctagcatcaaatacttatcttttcttgtaagctttgtacactcaaatcccaaagtgttaccgat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38791959 |
tgttccttcggttgaaaactaccccttcattaccagctagcatcaaatacttatcttttcttgtaagctttgtacactcaaatcccaaagtgttaccgat |
38792058 |
T |
|
| Q |
261 |
ctccgcttgaatatggttcgccacttcaaacctacattcctcagcattctcgctaactcgtggaaattgtgaaggacgaacttgggtcagtaactcaacc |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792059 |
ctccgcttgaatatggttcgccacttcaaacctacattcctcagcattctcgctaactcgtggaaattgtgaaggacgaacttgggtcagtaactcaacc |
38792158 |
T |
|
| Q |
361 |
gtgtaagccgggaaaggatcggcgaggnnnnnnnccgggtccaaagcctttagaccgctagcagttgtgccataaaacatgctgacgtgtgtatcaacag |
460 |
Q |
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| T |
38792159 |
gtgtaagccgggaaaggatcggcgaggaaaaaaaccgggtccaaagcctttagaccgctagcagttgtgccataaaacatgctgacgtgtgtatcaacag |
38792258 |
T |
|
| Q |
461 |
caactggtgttatctcatcacacatttcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatc |
560 |
Q |
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| T |
38792259 |
caactggtgttatctcatcacacatttcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatc |
38792358 |
T |
|
| Q |
561 |
cccttgttgtaacaacgttttcatcatttttgcatcaatatctctatttcttgacaaacgtaccgttttaattggtgctatcatctcagacattt |
655 |
Q |
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| T |
38792359 |
cccttgttgtaacaacgttttcatcatttttgcatcaatatctctatttcttgacaaacgtaccgttttaattggtgctattatctcagacattt |
38792453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 565
Target Start/End: Original strand, 16147604 - 16147667
Alignment:
| Q |
502 |
ctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
565 |
Q |
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| T |
16147604 |
ctaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaactaaatcacctt |
16147667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 16195331 - 16195268
Alignment:
| Q |
502 |
ctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
565 |
Q |
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| T |
16195331 |
ctaaaccttaataaataaggttccctacaagttgttccttcagggcacacaactaaatcacctt |
16195268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 565
Target Start/End: Original strand, 39975811 - 39975889
Alignment:
| Q |
487 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
565 |
Q |
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| T |
39975811 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacctt |
39975889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 25552900 - 25552961
Alignment:
| Q |
487 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggaca |
548 |
Q |
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|||| |||||||| |||||||||| || ||||||||||||||||| || ||||||||||| |
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| T |
25552900 |
tcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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