View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_7 (Length: 518)
Name: NF11309_low_7
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 33900500 - 33901001
Alignment:
| Q |
1 |
tggaagaaaagcacataaacaagaggaaattaatagatactttaaattattaatttggagtttggtttttactgttcctgnnnnnnnaacatctatggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33900500 |
tggaagaaaagcacataaacaagaggaaattaatagatactttaaattattaatttggagtttggtttttactgttcctgtttttttaacatctatggtt |
33900599 |
T |
|
| Q |
101 |
cttatgtatatacctggagttaaagatgttttagaggtcaaaattgtcaatatgttgaatattggattgctcatacggtgggagttttcgacaccggtac |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900600 |
cttatgtatatacctggagttaaaaatgttttagaggtcaaaattgtcaatatgttgaatattggattgctcatacggtgggagttttcgacaccggtac |
33900699 |
T |
|
| Q |
201 |
agtttgtcataggaagaagattttatgttggagcctataaagctttgagcaaaggttatgcaaacatggatttgttgatagcattaggaacaaatgcagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900700 |
agtttgtcataggaagaagattttatgttggagcctataaagctttgagcaaaggttatgcaaacatggatttgttgatagcattaggaacaaatgcagc |
33900799 |
T |
|
| Q |
301 |
ttatttctattctgtttatgttgttggaagagctacattttcttcccatttcgaaggaagtgannnnnnngaaacaagttctatgcttatttcttttatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33900800 |
ttatttctattctgtttatgttgttggaagagctacattttcttcccatttcgaaggaagtgatttttttgaaacaagttctatgcttatttcttttatt |
33900899 |
T |
|
| Q |
401 |
ctacttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaaccttactaactc |
500 |
Q |
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| T |
33900900 |
ctacttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaaccttactaactc |
33900999 |
T |
|
| Q |
501 |
tt |
502 |
Q |
| |
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|| |
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| T |
33901000 |
tt |
33901001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 391 - 502
Target Start/End: Original strand, 33918416 - 33918527
Alignment:
| Q |
391 |
ttcttttattctacttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaacc |
490 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918416 |
ttcttttattctatttggcaagtatttggaagtgttggctaaagggaaaacatcacaagctattgcgaaactcatggatttaacacctgatacagcaacc |
33918515 |
T |
|
| Q |
491 |
ttactaactctt |
502 |
Q |
| |
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|||||||||||| |
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| T |
33918516 |
ttactaactctt |
33918527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 2782021 - 2781968
Alignment:
| Q |
266 |
atggatttgttgatagcattaggaacaaatgcagcttatttctattctgtttat |
319 |
Q |
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|||||| || |||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
2782021 |
atggatgtgctgatagcactgggaacaaatgcagcttatttctattctgtttat |
2781968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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