View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309_low_8 (Length: 517)
Name: NF11309_low_8
Description: NF11309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 4590230 - 4590716
Alignment:
| Q |
18 |
agatgttgccttgtcagttatcatctagcagtgacatatttgtgtcaaaaaagtccctttatgtacaagtgttgtgctaaggatattgtcttcctcaaat |
117 |
Q |
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| T |
4590230 |
agatgttgccttgtcagttatcatctagcagtgacatatttgtgtcaaaaaagcccctttatgtacaagtgttgtgctaaggatattgtcttcctcaaat |
4590329 |
T |
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| Q |
118 |
ttgtagcaacatttcttctgcttgtggatctaatctatctccagatgag----catgaacatagggtcacatgaccatgtgcattcagaggatccaactc |
213 |
Q |
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| T |
4590330 |
ttgtagcaacatttcttctgcttgtggatctaatctatctccagatgagaaagcatgaacatagggtcacatgaccatgtgcattcagaggatccaactc |
4590429 |
T |
|
| Q |
214 |
aaacagtcgtgtggctgcacgtttagcaacatctgcatctgttttactcataccacacactccaatcaatgcccccgaagcagtcgtgcgaattgacaga |
313 |
Q |
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| T |
4590430 |
aagcagtcgtgtggctgcacgtttagcaacatctgcatctgttttactcataccacacactccaatcaatgcccccgaagcagtcgtgcgaattgacaga |
4590529 |
T |
|
| Q |
314 |
tttattctcaatattgtaaaatgctattcaaaatgatccttctgttagcttctatcattaaagattatgacatgttatgttaactagatatgtccccacg |
413 |
Q |
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| T |
4590530 |
tttattctcaatattgtaaaatgctattcaaaatgatccttctgttagcttctatcattaaagattatgacatgttatgttaactagatatgtccccacg |
4590629 |
T |
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| Q |
414 |
ttgatccaacacatgttgtcaacttattagggactaaatagtttacgaagtaatttatcaataattacaaatatgcatgaactaatt |
500 |
Q |
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| T |
4590630 |
ttgatccaatacatgttgtcaacttattagggactaaatagtttacgaagtaatttatcaataattacaaatatgcatgaactaatt |
4590716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 4604108 - 4604259
Alignment:
| Q |
18 |
agatgttgccttgtcagttatcatctagcagtgacatatttgtgtcaaaaaagtccctttatgtacaagtgttgtgctaaggatattg---tcttcctca |
114 |
Q |
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||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
4604108 |
agatgttgcctcgtcagttatcatctaacagtgatatatttgtgtcaaaaaagcccctttatgtacaagtgttgggctaaaaatattgttttcttcctca |
4604207 |
T |
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| Q |
115 |
aatttgtagcaacatttcttctgcttgtggatctaatctatctccagatgag |
166 |
Q |
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| T |
4604208 |
actttgtagcaacatttcttctgctagtggatctaatctatctccagatgag |
4604259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 4604389 - 4604498
Alignment:
| Q |
176 |
agggtcacatgaccatgtgcattcagaggatccaactcaaacagtcgtgtggctgcacgtttagcaacatctgcatctgttttactcataccacacactc |
275 |
Q |
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| T |
4604389 |
agggtcacatgacctggtgcattcagaggatccaactcaagtaatcgtgtggctgcacgtctagcaatatctgcatctgttttactcaaaccacatactc |
4604488 |
T |
|
| Q |
276 |
caatcaatgc |
285 |
Q |
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|||||||||| |
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| T |
4604489 |
caatcaatgc |
4604498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 397
Target Start/End: Original strand, 41725616 - 41725693
Alignment:
| Q |
320 |
ctcaatattgtaaaatgctattcaaaatgatccttctgttagcttctatcattaaagattatgacatgttatgttaac |
397 |
Q |
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|||||||||| ||||| ||||||||||||||| ||| |||| |||| ||| ||||||| |||||||| | |||||||| |
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| T |
41725616 |
ctcaatattgaaaaattctattcaaaatgatcattcggttaacttcaatcgttaaagactatgacatatcatgttaac |
41725693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 497
Target Start/End: Original strand, 41725762 - 41725796
Alignment:
| Q |
463 |
gtaatttatcaataattacaaatatgcatgaacta |
497 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
41725762 |
gtaatttatcaataattacaaatatacatgaacta |
41725796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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