View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_high_1 (Length: 633)
Name: NF1130_high_1
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 49 - 621
Target Start/End: Original strand, 35313736 - 35314306
Alignment:
| Q |
49 |
ggaccctatggttcatggattactctcactatgctactcaaacacaaaatctaacggcggcatacaaagtatcttatactgtcatattgattggtatatt |
148 |
Q |
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| T |
35313736 |
ggaccctatggttcatggattactctcactatgctactcaaacacaaaatctaacggcggcatacaaagtatcttatacagtcatattgattggtatatt |
35313835 |
T |
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| Q |
149 |
gattagaaaggttgtgcattcttcccatttgtagttgtggtactcactaggtcttgtctcaagaaaatgtaaaaggaaaataaaataaacactattatcc |
248 |
Q |
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| T |
35313836 |
gattagaaaggttgtgcattcttcccatttgtagttgtggtattcactaggtcttgtctcaagaaa-tgtaaaaggaaaataaaataaacactattatcc |
35313934 |
T |
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| Q |
249 |
atgaaatgttaatagttgttgatttgaacacacgaaatgtttgccaaagcattatggattatcaaatctttagtttgaaactttatggaaaatatagata |
348 |
Q |
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| T |
35313935 |
atgaaatgttaatagttgttgatttgaacacacaaaatgtttaccaaagcattatggattatcaaatctttagtttgaaactttatggaaaatatagata |
35314034 |
T |
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| Q |
349 |
agtttaaacttttcttctttttcccattcttattgctttgttacctaactttctttcattattattgtcaataataagtgatcaagtttaagaggaatat |
448 |
Q |
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| T |
35314035 |
agtttaaacttttcttctttttcccattcttattgctttgttacctaactttctttcattattattgtcaataataagtgatcaagtttaagaggaatat |
35314134 |
T |
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| Q |
449 |
gtatactacttaatgcatgtcttcgatacttgtaaattgtaattgtattcaattatatttcgtcatatatcatatatacaagtcgatcacctatatcctc |
548 |
Q |
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| T |
35314135 |
gtatactacttaatgcatgtcttcgatacttgtaaattgtaattgtattcaattatatttcgtcatatatcatatatacaagtcgatcacctatatcctc |
35314234 |
T |
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| Q |
549 |
tnnnnnnnnnnnnnnnntattacctatattattttatcatgcatatatactacaaatataccaacattatatt |
621 |
Q |
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| T |
35314235 |
t-aaaaaaaataaaaaatatcacctatattattttatcatgcatatatactacaaatataccaacattatatt |
35314306 |
T |
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