View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_high_16 (Length: 339)
Name: NF1130_high_16
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 7326938 - 7326802
Alignment:
| Q |
1 |
cagaatctttcaaacctaccacatggatttcaacttaatggattaaatgatatgaatatgcttcaagcgcataagttcaacgacatggatggaaggaagt |
100 |
Q |
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| T |
7326938 |
cagaatctttcatacctaccacatggatttcaacttaatggattcaatgatataaatatgcttcaagctcataagttcaactacatggatggaaggaagt |
7326839 |
T |
|
| Q |
101 |
agtccacaacactttaaattttcatgctagtttctta |
137 |
Q |
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| T |
7326838 |
agtccacaacactttaaattttcatgctagcttctta |
7326802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 7326710 - 7326606
Alignment:
| Q |
225 |
cttggtttttaagtggaataaatagtttgataaattgcttattatatttcttttggactgaaaattgaatgtaatgatgttattattacattcaaatctc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
7326710 |
cttggtttttaagtggaataaatagtttgataaattgcttattatatttcttttggactgaaaattgaatgtaatg--tttattattacatgcaaatctc |
7326613 |
T |
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| Q |
325 |
ctttgtt |
331 |
Q |
| |
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||||||| |
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| T |
7326612 |
ctttgtt |
7326606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 51792019 - 51791886
Alignment:
| Q |
1 |
cagaatctttcaaacctaccacatggatttcaacttaatggattaaatgatatgaatatgcttcaagcgcataagttcaacgacatggatggaaggaagt |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| |||| || | |||| || ||||| |||| ||| |||| |||||||||||| |
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| T |
51792019 |
cagaatctctcaaacctaccacatggatttcaacttaatggattcaatgctaaggatattctgcaagctcatatgtt------catgaatggaaggaagt |
51791926 |
T |
|
| Q |
101 |
agtccacaacactttaaattttcatgctagtttcttagta |
140 |
Q |
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||| || ||||||||| | ||||| ||||| ||||||||| |
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| T |
51791925 |
agtgcataacactttatactttcaggctagattcttagta |
51791886 |
T |
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