View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1130_high_18 (Length: 319)
Name: NF1130_high_18
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 76 - 312
Target Start/End: Original strand, 34143790 - 34144026
Alignment:
| Q |
76 |
tgctgagtgctgatgtgtgaccatatatgtgcaccttatattttatcttatcattatggaattgtatataaactatgtatctgtcggtcaacacgcttgt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
34143790 |
tgctgagtgctgatgtgtgaccatatatgtgcaccttatattttatcttatcattatggaattgtatataaactatgtatctatcggtcaacatgcttgt |
34143889 |
T |
|
| Q |
176 |
atagcatatgtattatattatactatatcccatctaagaatatttaataactagatgcaggccatgcattgcacgggtgtagtataattaaccaaaactt |
275 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34143890 |
atagcatatgtattatattatactgtattccatctaagaatatttaataactagatgcaggccaagcattgcacgggtgtagtataattaaccaaaactt |
34143989 |
T |
|
| Q |
276 |
aaatcttttgtatacttataaaaattcaacagaataa |
312 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34143990 |
aaatcttttatatacttataaaaattcaacagaataa |
34144026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 34143391 - 34143460
Alignment:
| Q |
7 |
ctttccagtctcttacattcttggtgtgctctgtatcatgataaccaggcaaaccggtatcatctgtggt |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34143391 |
ctttccagtctcttacattcttggtgtgctctgtatcatgataaccaggcaaaccggtatcatctgtggt |
34143460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 34133334 - 34133381
Alignment:
| Q |
7 |
ctttccagtctcttacattcttggtgtgctctgtatcatgataaccag |
54 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
34133334 |
ctttccagtctctaacatttttggtatgctctgtatcataataaccag |
34133381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University