View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_high_2 (Length: 594)
Name: NF1130_high_2
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 96 - 581
Target Start/End: Complemental strand, 3874465 - 3873981
Alignment:
| Q |
96 |
tagtgagaatccgatgctctttagttagtgcatactttgaaaagcaatattccacttaccatatcaatatttttgtgttgcaattccatcatatcatatc |
195 |
Q |
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| T |
3874465 |
tagtgagaatccgatgctctttagttagtgcatactttgaaaagcaatattccacttaccatatcaacatttttgtgttgcaattccatcatatcatatc |
3874366 |
T |
|
| Q |
196 |
atatatacatacattttaattaacaacacaattttcatctaaatcaatcttctgaaatggaacctgaagctagtaggaggggtcacaaattctcatctta |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3874365 |
atatatacatacattttaattaacaacacaattttcatctaaatcaatcttctgaa-tggaacctgaagctagtaggaggggtcacaaattttcatctta |
3874267 |
T |
|
| Q |
296 |
tgagagagtagcagccataagcttagtagttctagctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaacca |
395 |
Q |
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| T |
3874266 |
tgagagagtagcagccataagcttagtagttctagctgtggcttctcctctatacatagatcacagatcagagagtgagttggaagatgatgaacaacca |
3874167 |
T |
|
| Q |
396 |
attagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttatcagtgtttttggataagagcttcacaaggtttgatcgga |
495 |
Q |
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| T |
3874166 |
attagtgttactttatggttaccaatgttactttttgtattggttttagtcatatctttatcagcttttttggataagagcttcacaaggtttgatcgta |
3874067 |
T |
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| Q |
496 |
attggattcatagagttggtggttcttctggtggtattgttttcgttcttgttcttcgctttcttgttttgaagtgtaaagcatct |
581 |
Q |
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| T |
3874066 |
attggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct |
3873981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 230 - 584
Target Start/End: Complemental strand, 3884859 - 3884507
Alignment:
| Q |
230 |
tcatctaaatcaatcttctgaaatggaacctgaagctagtaggaggggtcacaaattctcatcttatgagagagtagcagccataagcttagtagttcta |
329 |
Q |
| |
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||||||||||||||||| |||| |||||| |||||||| ||||||||| |||||| || || | |||||||||||||||||||||||| ||||||||| |
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| T |
3884859 |
tcatctaaatcaatcttttgaa-tggaacttgaagctaataggaggggaagcaaattttcttcatttgagagagtagcagccataagcttggtagttcta |
3884761 |
T |
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| Q |
330 |
gctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgcttt |
429 |
Q |
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| T |
3884760 |
gctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgcttt |
3884661 |
T |
|
| Q |
430 |
ttgtattggttttagtcatatctttatcagtgtttttggataagagcttcacaaggtttgatcggaattggattcatagagttggtggttcttctggtgg |
529 |
Q |
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| T |
3884660 |
ttgtattggttttagtcatatctttatcagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggt-gttcttctggtgg |
3884562 |
T |
|
| Q |
530 |
tattgttttcgttcttgttcttcgctttcttgttttgaagtgtaaagcatctctg |
584 |
Q |
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|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
3884561 |
tattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatctctg |
3884507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 3885009 - 3884886
Alignment:
| Q |
99 |
tgagaatccgatgctctttagttagtgcatactttgaaaa-gcaatattccacttaccatatcaatatttttgtgttgcaattccatcatatcatatcat |
197 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
3885009 |
tgagaatccgatgctctttagt----gcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgcaatttcatcatatcatat-aa |
3884915 |
T |
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| Q |
198 |
atatacatacattttaattaacaacacaa |
226 |
Q |
| |
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| ||| |||||||||||||| |||||||| |
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| T |
3884914 |
acatatatacattttaattagcaacacaa |
3884886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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