View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1130_high_4 (Length: 530)

Name: NF1130_high_4
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1130_high_4
NF1130_high_4
[»] chr7 (3 HSPs)
chr7 (39-518)||(47234806-47235287)
chr7 (62-114)||(48157202-48157254)
chr7 (63-114)||(1417201-1417252)
[»] chr5 (5 HSPs)
chr5 (39-143)||(32728176-32728279)
chr5 (56-182)||(12425501-12425628)
chr5 (103-151)||(32728019-32728067)
chr5 (63-109)||(8481155-8481201)
chr5 (65-169)||(6593239-6593343)
[»] chr3 (3 HSPs)
chr3 (99-180)||(39602225-39602306)
chr3 (57-114)||(2128333-2128390)
chr3 (319-392)||(25503262-25503335)
[»] chr8 (2 HSPs)
chr8 (77-178)||(9956831-9956931)
chr8 (63-111)||(4558735-4558783)
[»] chr1 (2 HSPs)
chr1 (63-114)||(47002956-47003007)
chr1 (70-110)||(8795060-8795100)
[»] chr6 (3 HSPs)
chr6 (65-114)||(507159-507208)
chr6 (65-114)||(7351690-7351739)
chr6 (56-179)||(9093572-9093696)
[»] chr4 (1 HSPs)
chr4 (65-114)||(54392901-54392949)
[»] chr2 (1 HSPs)
chr2 (149-182)||(9877952-9877985)
[»] scaffold0103 (1 HSPs)
scaffold0103 (66-114)||(51508-51556)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 39 - 518
Target Start/End: Complemental strand, 47235287 - 47234806
Alignment:
Q  39 ataacaaacacttgttagataaacgtttatgtataaattatttatataataaaaaatacaataaagttaaattgttccgtataagttataacatattttc 138  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47235287 ataacaaacacttattagataaacgtttatgtataaattatttatataataaaaaatacaataaagttaaattgttccgtataagttataacatattttc 47235188  T
Q  139 acaatctaa---cttagagaacttatgaaaataaattgaaaacaactcatgtctatnnnnnnnnnnnccttaaataagtcaattcaaatagatcataatt 235  Q
    |||||||||   |||||||||||||||||||||| || ||||||||||||||||||           | |||||||||||||||||||||||||||||||    
T  47235187 acaatctaataacttagagaacttatgaaaataagttaaaaacaactcatgtctataaaaaaaaaaac-ttaaataagtcaattcaaatagatcataatt 47235089  T
Q  236 aggagtaacaagaggcaaactaaacaacaggaggaatttcatctgttgacaaaaaactaaagacagccaaatccatgatggtacctttgatataagtata 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47235088 aggagtaacaagaggcaaactaaacaacaggaggaatttcatctgttgacaaaaaactaaagacagccaaatccatgatggtacctttgatataagtata 47234989  T
Q  336 ctttctaagaacaccctctctaaggaacccagccttttccaaaactctttgagaagccttgttatccacgtaagtaaaagcttgcaaccttaacagatca 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47234988 ctttctaagaacaccctctctaaggaacccagccttttccaaaactctttgagaagccttgttatccacgtaagtaaaagcttgcaaccttaacagatca 47234889  T
Q  436 gaaaaatcattaaacacttgagatagagcaattttgattgcttttgtggctatcccttgaccccaatagttagaagcaacagc 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47234888 gaaaaatcattaaacacttgagatagagcaattttgattgcttttgtggctatcccttgaccccaatagttagaagcaacagc 47234806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 48157254 - 48157202
Alignment:
Q  62 cgtttatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    ||||||||||||| |||||| |||||||||| ||| |||||||| ||||||||    
T  48157254 cgtttatgtataacttatttctataataaaagataaaataaagtgaaattgtt 48157202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 1417201 - 1417252
Alignment:
Q  63 gtttatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    ||||||||||||| ||||||||||| |||| ||| |||||||| ||||||||    
T  1417201 gtttatgtataaactatttatataacaaaagataaaataaagtcaaattgtt 1417252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 32728279 - 32728176
Alignment:
Q  39 ataacaaacacttgttagataaacgtttatgtataaattatttatataataaaaaatacaataaagttaaattgttccgtataagttataacatattttc 138  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32728279 ataacaaacacttattagataaacgtttatgtattaattatttatata-taaaaattacaataaagttaaattgttccgtataagttataacatattttc 32728181  T
Q  139 acaat 143  Q
    |||||    
T  32728180 acaat 32728176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 12425501 - 12425628
Alignment:
Q  56 gataaacgtttatgtataaattatttatataataaaaaatacaataaagttaaattg-ttccgtataagttataacatattttcacaatctaacttagag 154  Q
    |||||||| ||||||||||| |||||||||| ||||| ||| ||||||||||||||| || |||||||| |||||  | ||||||||| ||| ||| |||    
T  12425501 gataaacgcttatgtataaactatttatatagtaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggag 12425600  T
Q  155 aacttatgaaaataaattgaaaacaact 182  Q
    ||||||||||||||| ||||||||||||    
T  12425601 aacttatgaaaataagttgaaaacaact 12425628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 32728067 - 32728019
Alignment:
Q  103 agttaaattgttccgtataagttataacatattttcacaatctaactta 151  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32728067 agttaaattgttccgtataagttataacatattttcacaatttaactta 32728019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 8481155 - 8481201
Alignment:
Q  63 gtttatgtataaattatttatataataaaaaatacaataaagttaaa 109  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  8481155 gtttatgtataatttatttatataataaaagataaaataaagttaaa 8481201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 6593239 - 6593343
Alignment:
Q  65 ttatgtataaattatttatataataaaaaatacaataaagttaaattgttccgtataagttataacatattttcacaatctaacttagagaacttatgaa 164  Q
    |||||||||||  |||| ||||| |||| ||| |||||||||||||| ||| ||||| | |||||  | |||| | || ||| |||||||| ||||||||    
T  6593239 ttatgtataaacaatttctataacaaaagataaaataaagttaaattattctgtataggctataagctgttttgataagctaccttagagagcttatgaa 6593338  T
Q  165 aataa 169  Q
    |||||    
T  6593339 aataa 6593343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 39602306 - 39602225
Alignment:
Q  99 ataaagttaaattgttccgtataagttataacatattttcacaatctaacttagagaacttatgaaaataaattgaaaacaa 180  Q
    |||||||||||||||| ||||||||||||||  | |||||| || ||| ||| |||||||||||||||||| ||||||||||    
T  39602306 ataaagttaaattgttgcgtataagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaa 39602225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 2128390 - 2128333
Alignment:
Q  57 ataaacgtttatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    |||| |||||||||||||  ||||| ||||| |||| ||| |||||||||||||||||    
T  2128390 ataagcgtttatgtataagctatttctataacaaaagataaaataaagttaaattgtt 2128333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 25503262 - 25503335
Alignment:
Q  319 cctttgatataagtatactttctaagaacaccctctctaaggaacccagccttttccaaaactctttgagaagc 392  Q
    ||||||| ||| | ||||||||| || | |||||| |||||||||||| |||||||||| || || ||||||||    
T  25503262 cctttgacatatgaatactttctgagtataccctccctaaggaacccaaccttttccaagaccctctgagaagc 25503335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 9956931 - 9956831
Alignment:
Q  77 tatttatataataaaaaatacaataaagttaaattgttccgtataagttataacatattttcacaatctaacttagagaacttatgaaaataaattgaaa 176  Q
    ||||| ||||| |||| ||| |||||||||  ||| |||| ||||||||||||  | |||||| |||||| ||| ||||||||||||||||||  |||||    
T  9956931 tatttctataacaaaagataaaataaagttttatttttcc-tataagttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaa 9956833  T
Q  177 ac 178  Q
    ||    
T  9956832 ac 9956831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 4558735 - 4558783
Alignment:
Q  63 gtttatgtataaattatttatataataaaaaatacaataaagttaaatt 111  Q
    ||||||||||||  ||||| |||||||||| ||| ||||||||||||||    
T  4558735 gtttatgtataagctatttctataataaaagataaaataaagttaaatt 4558783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 47003007 - 47002956
Alignment:
Q  63 gtttatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    ||||||| |||||||||||  ||||||||| ||| |||||||||||||||||    
T  47003007 gtttatgcataaattatttcgataataaaagataaaataaagttaaattgtt 47002956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 8795060 - 8795100
Alignment:
Q  70 tataaattatttatataataaaaaatacaataaagttaaat 110  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  8795060 tataagttatttatataataaaagataaaataaagttaaat 8795100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 507159 - 507208
Alignment:
Q  65 ttatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    ||||||||||||||||| ||||| |||| ||| |||||||||| ||||||    
T  507159 ttatgtataaattatttctataacaaaagataaaataaagttagattgtt 507208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 7351739 - 7351690
Alignment:
Q  65 ttatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    ||||||||||| |||||||||||||||  ||| |||||||||||| ||||    
T  7351739 ttatgtataaactatttatataataaactataaaataaagttaaactgtt 7351690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 9093696 - 9093572
Alignment:
Q  56 gataaacgtttatgtataaattatttatataataaaaaatacaataaagttaaattgttc-cgtataagttataacatattttcacaatctaacttagag 154  Q
    ||||| || ||||| ||||  ||||| ||||  |||| ||| |||||||||||||||||  |||||||| |||||  | |||||| || ||  |||||||    
T  9093696 gataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttagag 9093597  T
Q  155 aacttatgaaaataaattgaaaaca 179  Q
    |||||| ||||||||  ||||||||    
T  9093596 aacttaagaaaataagctgaaaaca 9093572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 54392949 - 54392901
Alignment:
Q  65 ttatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    ||||||||||  ||||| |||||||||||||| |||||||||||||||||    
T  54392949 ttatgtataagctatttctataataaaaaata-aataaagttaaattgtt 54392901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 9877985 - 9877952
Alignment:
Q  149 ttagagaacttatgaaaataaattgaaaacaact 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  9877985 ttagagaacttatgaaaataagttgaaaacaact 9877952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 51508 - 51556
Alignment:
Q  66 tatgtataaattatttatataataaaaaatacaataaagttaaattgtt 114  Q
    ||||||||| |||||| ||||| |||| ||| |||||||||||||||||    
T  51508 tatgtataagttatttttataacaaaatataaaataaagttaaattgtt 51556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University