View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_high_6 (Length: 467)
Name: NF1130_high_6
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_high_6 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 29 - 458
Target Start/End: Complemental strand, 5438785 - 5438356
Alignment:
| Q |
29 |
aatatttgcttcaattcattatacagactattagtctcacttaaaaattccatattaaccaaaataatagtgagggtgagataatgataatgagtaatga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5438785 |
aatatttgcttcaattcattatacagactattagtctcacttaaaaattccatattaaccaaaataatagtgagggtgagataatgataatgagtaataa |
5438686 |
T |
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| Q |
129 |
caaattgtaccactctctaaaattttgaaaactgtaagtgtgtaatagtttcttttcataaaaacaaagtccattcaaaggataccgcaactcaacatgc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438685 |
caaattgtaccactctctaaaattttgaaaactgtaagtgtgtaatagtttcttttcataaaaacaaagtccattcaaaggataccgcaactcaacatgc |
5438586 |
T |
|
| Q |
229 |
taccaaaatcaaaacttatccaaggattactagtatatcaaatatataactaacatggaagatgcatacacattttaggacacgaagatccaataggatt |
328 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438585 |
taccaaaatcaaaacttatccaaggattacttgtatatcaaatatataactaacatggaagatgcatacacattttaggacacgaagatccaataggatt |
5438486 |
T |
|
| Q |
329 |
atgacccaatcattgggcgcaacccacacaagcatgaggggtagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaa |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5438485 |
atgacccaatcattgggcgcaacccacacaagcatgaggggtagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaa |
5438386 |
T |
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| Q |
429 |
tggtttgacccacacttttaggagaataat |
458 |
Q |
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| T |
5438385 |
tggtttgacccacacttttaggagaataat |
5438356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 365 - 451
Target Start/End: Complemental strand, 5435922 - 5435836
Alignment:
| Q |
365 |
aggggtagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttagga |
451 |
Q |
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| T |
5435922 |
aggggtagaagcttagggaagcttggtaacttgagccagagtcttaggaataataataaattagtggtttgacccacacttttagga |
5435836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 5127222 - 5127335
Alignment:
| Q |
183 |
ttcataaaaacaaagtccattcaaaggataccgcaactcaacatgctaccaaaatcaaaacttatccaaggattactagtatatcaaatatataactaac |
282 |
Q |
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| T |
5127222 |
ttcataaaaacaaagtaaatgcaaatgatttcacaactctacatgctaccaaaagcaaaactaat-catggataacttgttaatccaatatataacaaac |
5127320 |
T |
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| Q |
283 |
atggaagatgcatac |
297 |
Q |
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|||||||| |||||| |
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| T |
5127321 |
atggaagaggcatac |
5127335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 22280669 - 22280632
Alignment:
| Q |
421 |
ttaattaatggtttgacccacacttttaggagaataat |
458 |
Q |
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| T |
22280669 |
ttaattagtggtttgacccacacttttaggagaataat |
22280632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 458
Target Start/End: Complemental strand, 12021846 - 12021758
Alignment:
| Q |
370 |
tagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataat |
458 |
Q |
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| T |
12021846 |
tagaagctgaggggagcttggtggcttgagccacaatcttaggagtaatggttaattagtggtttgacccacacttttaggagaataat |
12021758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 370 - 458
Target Start/End: Original strand, 9067647 - 9067735
Alignment:
| Q |
370 |
tagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggagaataat |
458 |
Q |
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||||||||||||| ||||||||| ||||| ||| | |||||| | |||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
9067647 |
tagaagctgaggggagcttggtggcttgatccacaatcttagtagtaatggttaattagtggtttgacccacacttttaggagaataat |
9067735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 453
Target Start/End: Complemental strand, 17300905 - 17300821
Alignment:
| Q |
369 |
gtagaagctgagggaagcttggtgacttgaaccagagtcttaggaataataattaattaatggtttgacccacacttttaggaga |
453 |
Q |
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| T |
17300905 |
gtagaagctgagggaagctttgtggcttgagccacaatcttaagaaaaataattaattagtgatttgagccataattttaggaga |
17300821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 77774 - 77712
Alignment:
| Q |
304 |
taggacacgaagatccaataggatt-atgacccaatcattgggcgcaacccacacaagcatga |
365 |
Q |
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|||||||| || ||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
77774 |
taggacaccaaaatccaataggattgatgactcaatcattgggcccaacccacacaagcatga |
77712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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