View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1130_low_1 (Length: 676)

Name: NF1130_low_1
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1130_low_1
NF1130_low_1
[»] chr3 (1 HSPs)
chr3 (93-661)||(15761622-15762183)
[»] chr5 (3 HSPs)
chr5 (438-659)||(5671989-5672208)
chr5 (289-384)||(5671293-5671388)
chr5 (343-387)||(13755907-13755951)
[»] chr7 (5 HSPs)
chr7 (438-659)||(13342432-13342652)
chr7 (438-659)||(13331517-13331737)
chr7 (289-384)||(13330846-13330941)
chr7 (289-384)||(13341761-13341856)
chr7 (451-557)||(33430229-33430336)
[»] chr2 (2 HSPs)
chr2 (437-673)||(26661410-26661646)
chr2 (451-557)||(6049931-6050037)
[»] chr6 (2 HSPs)
chr6 (437-673)||(21481328-21481564)
chr6 (437-569)||(19701165-19701298)
[»] chr8 (2 HSPs)
chr8 (437-566)||(32717808-32717938)
chr8 (437-566)||(10637656-10637786)
[»] scaffold0586 (1 HSPs)
scaffold0586 (437-569)||(9598-9731)
[»] chr1 (2 HSPs)
chr1 (437-569)||(22893808-22893941)
chr1 (451-557)||(44306148-44306253)
[»] chr4 (1 HSPs)
chr4 (451-557)||(13893703-13893809)


Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 93 - 661
Target Start/End: Original strand, 15761622 - 15762183
Alignment:
93 agcaattacaaaaggtccaagactcactataaaccaaaactgatggcagcagaaacaaccaaccgttggcaaatagcagtccaggataaaataaaagcct 192  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
15761622 agcaattacaaaaggtccaagactcacta--aaccaaaactgatggcagcagaaacagccaaccgttagcaaatagcagtccaggataaaataaaagcct 15761719  T
193 agaattacaaaaacgcagcaaacnnnnnnnnctagcagtaccaaaacaacctcccacccaatcgtaacaaacaaagcataatttgcacggcttctatatc 292  Q
    |||| ||||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
15761720 agaactacaaaaacgcagcaaacaaaaaaa-ctagcagtaccaaaacaacctcccacccaaccgtaacaaacaaagcataatttgcacggcttctatatc 15761818  T
293 tactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgttcaatgttg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
15761819 tactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattttgttcaatgttg 15761918  T
393 agacaaggcaataaacaacaatagcagaaagaaagnnnnnnnnncagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatga 492  Q
    ||||||||||||||||||||||||||| ||||||          |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
15761919 agacaaggcaataaacaacaatagcag-aagaaa---aaaaaaacagagaaaatataccaatcaccaaatctatgttgagtaatagaagaattgagatga 15762014  T
493 aattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaa 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
15762015 aattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttgatgaacatacaaagatcatatgatgttttttatatagaagaa 15762114  T
593 gatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcgggaatgacaaggataaaaatggtat 661  Q
     |||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||||    
15762115 catgagtgaaaatgtttagtgggaatcagagaaaaagaatggcacgaatgacaaggacaaaaatggtat 15762183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 438 - 659
Target Start/End: Original strand, 5671989 - 5672208
Alignment:
438 agagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaat 537  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  |||    
5671989 agagaaattttaccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaat 5672088  T
538 tagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcgg 637  Q
     ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||||||||||||||  ||||||| ||||    
5672089 cagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgg 5672186  T
638 gaatgacaaggataaaaatggt 659  Q
    |||||||||||  |||||||||    
5672187 gaatgacaagggcaaaaatggt 5672208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 5671293 - 5671388
Alignment:
289 tatctactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 384  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
5671293 tatcttctatttcaatttgttattttaaatggaaaaaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 5671388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 13755907 - 13755951
Alignment:
343 aaagatctataaatcctactcatagaccaaagatattctgttcaa 387  Q
    |||||||||||||||  |||||||||||||||||||| |||||||    
13755907 aaagatctataaatctcactcatagaccaaagatattatgttcaa 13755951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 438 - 659
Target Start/End: Original strand, 13342432 - 13342652
Alignment:
438 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 536  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  ||    
13342432 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaa 13342531  T
537 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 636  Q
    | ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||||||||||||||  ||||||| |||    
13342532 tcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcg 13342629  T
637 ggaatgacaaggataaaaatggt 659  Q
    ||||||||||||  |||||||||    
13342630 ggaatgacaagggcaaaaatggt 13342652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 438 - 659
Target Start/End: Original strand, 13331517 - 13331737
Alignment:
438 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 536  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  ||    
13331517 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaa 13331616  T
537 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 636  Q
    | ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||||||||||||||  ||||||| |||    
13331617 tcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcg 13331714  T
637 ggaatgacaaggataaaaatggt 659  Q
    |||||| |||||  |||||||||    
13331715 ggaatggcaagggcaaaaatggt 13331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 13330846 - 13330941
Alignment:
289 tatctactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 384  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
13330846 tatcttctatttcaatttgttattttaaatggaaaaaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 13330941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 13341761 - 13341856
Alignment:
289 tatctactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 384  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
13341761 tatcttctatttcaatttgttattttaaatggaaaaaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 13341856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 557
Target Start/End: Original strand, 33430229 - 33430336
Alignment:
451 caatcaccaaatctatgttgagtaatggaagaattgagatgaaa-ttagatggtactttgaaaagaatagtgaaa-tcaaaacccaaattagcaaacagt 548  Q
    |||||| |||||||| ||||||||||||||  ||| | |  ||| ||||||||||| ||||| |||||||||||| |||||| ||||| ||||||||| |    
33430229 caatcatcaaatctacgttgagtaatggaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaa-tagcaaacact 33430327  T
549 tgatgaaca 557  Q
    |||||||||    
33430328 tgatgaaca 33430336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 437 - 673
Target Start/End: Complemental strand, 26661646 - 26661410
Alignment:
437 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 536  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || ||    
26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 26661547  T
537 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 636  Q
    || |||| ||||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| |||    
26661546 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg 26661447  T
637 ggaatgacaaggataaaaatggtatattcttggagat 673  Q
    |||||| ||||| || ||  ||||| || ||||||||    
26661446 ggaatggcaagggtagaagaggtattttgttggagat 26661410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 451 - 557
Target Start/End: Complemental strand, 6050037 - 6049931
Alignment:
451 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 550  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||    
6050037 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 6049938  T
551 atgaaca 557  Q
    |||||||    
6049937 atgaaca 6049931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 437 - 673
Target Start/End: Complemental strand, 21481564 - 21481328
Alignment:
437 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 536  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || ||    
21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa 21481465  T
537 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 636  Q
    || ||||  |||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| ||     
21481464 ttggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagca 21481365  T
637 ggaatgacaaggataaaaatggtatattcttggagat 673  Q
    |||||| ||||| || ||  ||||| || ||||||||    
21481364 ggaatggcaagggtagaagaggtattttgttggagat 21481328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 437 - 569
Target Start/End: Complemental strand, 19701298 - 19701165
Alignment:
437 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc-aaaacccaa 535  Q
    ||||||||| |||  ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| ||||||||| ||||| |||    
19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
536 attagcaaacagttgatgaaca-tacaaagatcat 569  Q
    || ||||| ||||||||||||| ||||||||||||    
19701198 at-agcaagcagttgatgaacactacaaagatcat 19701165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 437 - 566
Target Start/End: Original strand, 32717808 - 32717938
Alignment:
437 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 535  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||    
32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 32717907  T
536 attagcaaacagttgatgaaca-tacaaagat 566  Q
    |  ||||| ||||||||||||| |||||||||    
32717908 a-cagcaagcagttgatgaacactacaaagat 32717938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 437 - 566
Target Start/End: Complemental strand, 10637786 - 10637656
Alignment:
437 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 535  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||| |||||| |||    
10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa 10637687  T
536 attagcaaacagttgatgaaca-tacaaagat 566  Q
    |  ||||| ||||||||||||| |||||||||    
10637686 a-cagcaagcagttgatgaacactacaaagat 10637656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 569
Target Start/End: Complemental strand, 9731 - 9598
Alignment:
437 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 535  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||    
9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
536 attagcaaacagttgatgaaca-tacaaagatcat 569  Q
    |  | ||| ||||||||||||| ||||||||||||    
9631 a-caacaagcagttgatgaacactacaaagatcat 9598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 569
Target Start/End: Complemental strand, 22893941 - 22893808
Alignment:
437 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 535  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||| |||||| |||    
22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa 22893842  T
536 attagcaaacagttgatgaaca-tacaaagatcat 569  Q
    |  ||||| ||||||||||||| ||||||||||||    
22893841 a-cagcaagcagttgatgaacactacaaagatcat 22893808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 451 - 557
Target Start/End: Complemental strand, 44306253 - 44306148
Alignment:
451 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 550  Q
    |||| |||||||||||||||||||||||||||||||| | | |||| |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||    
44306253 caatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 44306155  T
551 atgaaca 557  Q
    |||||||    
44306154 atgaaca 44306148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 451 - 557
Target Start/End: Original strand, 13893703 - 13893809
Alignment:
451 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 550  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| || ||| ||||||    
13893703 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaagcagttg 13893802  T
551 atgaaca 557  Q
    |||||||    
13893803 atgaaca 13893809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University