View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1130_low_11 (Length: 406)
Name: NF1130_low_11
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_11 |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 121 - 312
Target Start/End: Complemental strand, 22204919 - 22204731
Alignment:
| Q |
121 |
aagacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaat |
220 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22204919 |
aagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaat |
22204820 |
T |
|
| Q |
221 |
ttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgtt |
312 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22204819 |
ttcttg---ttgtcagcagtaagtggacctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttctgtgtt |
22204731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 122 - 312
Target Start/End: Original strand, 20086245 - 20086435
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt |
221 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
20086245 |
agacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctagacagtaaagggtctgagattcagaaatccttgcttcttttgtggcaaact |
20086344 |
T |
|
| Q |
222 |
tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgtt |
312 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
20086345 |
tcttgttgttgtcagtagtaagtggacctgctgcttcctctgcagttttatccatcgtcgaaaacaataaaggcatgaagctttctgtgtt |
20086435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 125 - 322
Target Start/End: Original strand, 20238161 - 20238358
Alignment:
| Q |
125 |
caggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttct |
224 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| | |||| | |||||||| ||| |
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|
| T |
20238161 |
caggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcg |
20238260 |
T |
|
| Q |
225 |
tgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgttg |
322 |
Q |
| |
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||| |||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
20238261 |
tgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgttagatacgttg |
20238358 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 125 - 322
Target Start/End: Original strand, 22132145 - 22132342
Alignment:
| Q |
125 |
caggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttct |
224 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| | |||| | |||||||| ||| |
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| T |
22132145 |
caggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcg |
22132244 |
T |
|
| Q |
225 |
tgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgttg |
322 |
Q |
| |
|
||| |||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
22132245 |
tgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgttagatacgttg |
22132342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 337
Target Start/End: Complemental strand, 24385131 - 24384916
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt |
221 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||| | | | |||| ||| || |||||| ||| | |
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|
| T |
24385131 |
agacaggttctgcaatcattaggggacaagtctggcgtgcactgagctaaatagtaaagcgtctaaaaatttgaaacagatgcatcacttgtggaaaact |
24385032 |
T |
|
| Q |
222 |
tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgtt |
321 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||||||| ||| |
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|
| T |
24385031 |
tcttgttgttgcaagcagtaagtggacctactgcttcctctgcagttatattcattgtcgaaaataataaagccatgaagctttttgtgttagatatgtt |
24384932 |
T |
|
| Q |
322 |
gcctacgttcaacatg |
337 |
Q |
| |
|
|||| ||||| ||||| |
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|
| T |
24384931 |
gcctgcgttccacatg |
24384916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 293
Target Start/End: Original strand, 20205565 - 20205736
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctt-tgcttcttttgtggcaaat |
220 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||| ||| | |||||| ||||||||| || ||||| |
|
|
| T |
20205565 |
agacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttctttggttgcaaac |
20205663 |
T |
|
| Q |
221 |
ttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaag |
293 |
Q |
| |
|
|||| ||| |||||| || |||||||| ||||||||| ||| ||||| |||||| || | ||||||||||| |
|
|
| T |
20205664 |
ttctcgtttttgtcaccaataagtggacttgctgcttcatctacagttcgattcatggttgtaaacaataaag |
20205736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 312
Target Start/End: Original strand, 21972129 - 21972316
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt |
221 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||| |||||||||||||||| | ||||||||||||| ||| |||| |||||||||||| ||||| |
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|
| T |
21972129 |
agacaggttctgcaatcattaggcgacaaatccagcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaa-- |
21972226 |
T |
|
| Q |
222 |
tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgtt |
312 |
Q |
| |
|
|||||| |||||| || |||| ||| ||||||||| ||||||||| |||||| || ||||||||||||| || ||||||||| ||||| |
|
|
| T |
21972227 |
-cttgttcttgtcaccactaagcggacttgctgcttcgtctgcagttcgattcatggttgaaaacaataaagacacgaagcttttcgtgtt |
21972316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 293
Target Start/End: Original strand, 22099588 - 22099759
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctt-tgcttcttttgtggcaaat |
220 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||| ||| | |||||| ||||||||| || ||||| |
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|
| T |
22099588 |
agacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttctttggttgcaaac |
22099686 |
T |
|
| Q |
221 |
ttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaag |
293 |
Q |
| |
|
|||| ||| |||||| || |||||||| ||||||||| ||| ||||| |||||| || | ||||||||||| |
|
|
| T |
22099687 |
ttctcgtttttgtcaccaataagtggacttgctgcttcatctacagttcgattcatggttgtaaacaataaag |
22099759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 21006732 - 21006613
Alignment:
| Q |
11 |
ttatactacaaaacgcggaggcttgaaaatggtcactatcttgactagactagtagcagttactatacacacccccatagttcaaaacattaggcaggtt |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006732 |
ttattctacaaaacgaggaggcttgaaaatggtcactatcttgactagactagtagcagttactatacacacccccatagttcaaaacattaggcaggtt |
21006633 |
T |
|
| Q |
111 |
tctactaaaaaagacaggtt |
130 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21006632 |
tctactaaaaaagacaggtt |
21006613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 322
Target Start/End: Original strand, 16194 - 16394
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt |
221 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||||||| ||||| ||||||||| || |||| |||||||||||| ||||| | |
|
|
| T |
16194 |
agacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtatagggtctgatttttcgaaactcgtgcttcttttgttgcaaact |
16293 |
T |
|
| Q |
222 |
tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgtt |
321 |
Q |
| |
|
|||| || |||| || |||||||| ||||||||| |||||||||| | | || |||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
16294 |
tcttttttatgtctccaataagtggacgtgctgcttcatctgcagtttcgtaccaggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgtt |
16393 |
T |
|
| Q |
322 |
g |
322 |
Q |
| |
|
| |
|
|
| T |
16394 |
g |
16394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 322
Target Start/End: Complemental strand, 47747 - 47547
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt |
221 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||| || |||| |||||||||||| ||||| | |
|
|
| T |
47747 |
agacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaact |
47648 |
T |
|
| Q |
222 |
tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgtt |
321 |
Q |
| |
|
|||| || | || || |||||||| ||||||||| |||||||||| | | || |||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
47647 |
tcttttttatatctccaataagtggacgtgctgcttcatctgcagtttcgtacccggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgtt |
47548 |
T |
|
| Q |
322 |
g |
322 |
Q |
| |
|
| |
|
|
| T |
47547 |
g |
47547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 5268 - 5203
Alignment:
| Q |
122 |
agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctga |
187 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
5268 |
agacaggttctgcaattgttaggggacaagtccggcgtgcactgttctagacagtacagggtctga |
5203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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