View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1130_low_12 (Length: 401)

Name: NF1130_low_12
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1130_low_12
NF1130_low_12
[»] chr8 (1 HSPs)
chr8 (1-374)||(43876499-43876867)
[»] chr1 (2 HSPs)
chr1 (261-299)||(12132091-12132129)
chr1 (255-287)||(8856781-8856813)
[»] chr6 (2 HSPs)
chr6 (255-299)||(26373099-26373143)
chr6 (255-299)||(14399831-14399874)
[»] scaffold0913 (1 HSPs)
scaffold0913 (255-305)||(1279-1329)
[»] scaffold0898 (1 HSPs)
scaffold0898 (255-305)||(4272-4322)
[»] chr7 (1 HSPs)
chr7 (255-288)||(7245950-7245983)
[»] chr3 (1 HSPs)
chr3 (255-288)||(51616393-51616426)
[»] chr5 (1 HSPs)
chr5 (255-287)||(17755234-17755266)
[»] chr2 (1 HSPs)
chr2 (255-299)||(28044715-28044759)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 43876867 - 43876499
Alignment:
Q  1 cattgaaactgtcctttggactacccaattctctgggtactgtaatctttataccagatgggggattcattactaggttcctagtgggacaagcaaccta 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43876867 cattgaaaatgtcctttggactacccaattctctgggtactgtaatctttataccagatgggggattcattactaggttcctagtgggacaagcaaccta 43876768  T
Q  101 agatctccacaaagatacatttcaaagaaattccctttgtgtcatatcacccaaagaactcttcaaagcctgaaattcatatcaattcacggtactctga 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43876767 agatttccacaaagatacatttcaaagaaattccctttgtgtcatatcacccaaagaactcttcaaagcctgaaattcatatcaattcacggtactctga 43876668  T
Q  201 atcagtttcttcaattgcgtatgttcaaactatgctacacaacagttagaagccctatttgacaacactctgtactaaatagcgtatcataaaacaatat 300  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43876667 atcagtttcttcaattgtgtatgttcaaactatgctacgcaacagttagaagccctatttgacaacactctgtactaaatagcgtatcataaaacaatat 43876568  T
Q  301 cgactaggtcaggtcaaaatccgctacgctataaccgctattcgacagtactcataatcatcaacatgcagtta 374  Q
    |||||||     ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  43876567 cgactag-----gtcaaaatccgctacgctataactgctattcgacagtactcataatcaccaacatgcagtta 43876499  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 12132091 - 12132129
Alignment:
Q  261 gacaacactctgtactaaatagcgtatcataaaacaata 299  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  12132091 gacaacactttgtactaaatagcgtatcataaaacaata 12132129  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 8856813 - 8856781
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtat 287  Q
    |||||||||||||||||||||| ||||||||||    
T  8856813 ctatttgacaacactctgtactgaatagcgtat 8856781  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 26373143 - 26373099
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtatcataaaacaata 299  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||    
T  26373143 ctatttgacaacactttgtactaaatagcgtatcacagaacaata 26373099  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 14399874 - 14399831
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtatcataaaacaata 299  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||    
T  14399874 ctatttgacaacactttgtactaaatagc-tatcacaaaacaata 14399831  T

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Target: scaffold0913 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 1279 - 1329
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtatcataaaacaatatcgact 305  Q
    ||||||||||||||| |||||||||||| ||||||   |||||||||||||    
T  1279 ctatttgacaacactttgtactaaatagtgtatcacggaacaatatcgact 1329  T

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Target: scaffold0898 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 4322 - 4272
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtatcataaaacaatatcgact 305  Q
    ||||||||||||||| |||||||||||| ||||||   |||||||||||||    
T  4322 ctatttgacaacactttgtactaaatagtgtatcacggaacaatatcgact 4272  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 7245950 - 7245983
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtatc 288  Q
    ||||||||||||||| ||||||||||||||||||    
T  7245950 ctatttgacaacactttgtactaaatagcgtatc 7245983  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 51616393 - 51616426
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtatc 288  Q
    |||||||||||||||||||| |||||||||||||    
T  51616393 ctatttgacaacactctgtattaaatagcgtatc 51616426  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 17755234 - 17755266
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtat 287  Q
    ||||||||||||||| |||||||||||||||||    
T  17755234 ctatttgacaacactttgtactaaatagcgtat 17755266  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 28044715 - 28044759
Alignment:
Q  255 ctatttgacaacactctgtactaaatagcgtatcataaaacaata 299  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||    
T  28044715 ctatttgacaacactttgtactaaatcgcatatcacaaaacaata 28044759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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