View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_13 (Length: 395)
Name: NF1130_low_13
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 30 - 379
Target Start/End: Original strand, 506120 - 506469
Alignment:
| Q |
30 |
aaaagtcggttttgtaaagatgagttaagttctataaaaaacttaataatggccgcatgagctggatttcggttgtgactaatgaaacaactgatttgga |
129 |
Q |
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| T |
506120 |
aaaagtcggttttgtaaagatgagttaagttatataaaaaacttaataatggccacatgagctggatttcggttgtgactaatgaaacaattgatttgga |
506219 |
T |
|
| Q |
130 |
acagatacagtagcccaacaagaattgtggtcctaaccagtgtgtgtattatactaaaggtgttattaggtttggacaacagtttgttgtatcaatcaac |
229 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
506220 |
acagatgcagtagcccaacaagaattgtggtcctaaccagtgtgtgtattatactaaaggtgttattaggtttggagaacagtttgttgtatcaatcaac |
506319 |
T |
|
| Q |
230 |
tgccatatacttttcatatcagattcagaactctgatccctatgaaagagtcttcttttaagtggggtttttgtagaggtttaagtgattctgggaccat |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506320 |
tgccatatacttttcatatcagattcagaactctgatccctctgaaagagtcttcttttaagtggggtttttgtagaggtttaagtgattctgggaccat |
506419 |
T |
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| Q |
330 |
tacaagactctcagacaagtgatgttttgatgtgaagtaacctcattcat |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506420 |
tacaagactctcagacaagtgatgttttgatgtgaagtaacctcattcat |
506469 |
T |
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