View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_14 (Length: 393)
Name: NF1130_low_14
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 105 - 381
Target Start/End: Original strand, 34787821 - 34788097
Alignment:
| Q |
105 |
gctcaagttgagatgaaggataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagt |
204 |
Q |
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| T |
34787821 |
gctcaagttgagatgaagaataagtttattaatcatgctcggaatgtttgggatcgcgcggttactcttttgccgcgggttgatcagttgtggtataagt |
34787920 |
T |
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| Q |
205 |
atattcatatggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatctta |
304 |
Q |
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| T |
34787921 |
atattcatatggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatctta |
34788020 |
T |
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| Q |
305 |
tataaaatttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatccta |
381 |
Q |
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| T |
34788021 |
tataaaatttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatccta |
34788097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 109 - 381
Target Start/End: Complemental strand, 2293372 - 2293100
Alignment:
| Q |
109 |
aagttgagatgaaggataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatat |
208 |
Q |
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|||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||| |
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| T |
2293372 |
aagttgagatgaagaataagtttattaaccatgcgaggaatgtttgggatcgcgctgttactcttttgccacgagtggatcagttgtggtataagtatat |
2293273 |
T |
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| Q |
209 |
tcatatggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatata |
308 |
Q |
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| T |
2293272 |
tcatatggaggagatgcttggcaatgttgcgggggcgagacaggtttttgagagatggatgaaatggatgccggatcagcaaggatggctatcttatata |
2293173 |
T |
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| Q |
309 |
aaatttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatccta |
381 |
Q |
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| T |
2293172 |
aaatttgagctgagatataatgagattgaacgagctagagggattttcgagagatttgtattgtgtcatccta |
2293100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 312
Target Start/End: Complemental strand, 33635999 - 33635822
Alignment:
| Q |
135 |
aatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattcatatggaggagatgcttggcaatg |
234 |
Q |
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|||||||| ||||||||| || ||||| |||| |||||| |||||||| |||| ||||||||| |||| || ||||||||| |||| |||||||||| |
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| T |
33635999 |
aatcatgcaaggaatgtttacgatcgcgctgttattcttttaccgcgggtccatcaattgtggtatgagtacatacatatggagaagattcttggcaatg |
33635900 |
T |
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| Q |
235 |
ttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaat |
312 |
Q |
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| || || | || |||||||||||| |||||| | |||||||| |||||||| | |||| | ||||| ||||||| |
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| T |
33635899 |
tcgccggagttagagaggttttcgagaggtggatggaatggatgcctgatcagcatgcatggctctcttacataaaat |
33635822 |
T |
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