View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1130_low_15 (Length: 390)
Name: NF1130_low_15
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_15 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 45697371 - 45697767
Alignment:
| Q |
10 |
ataattcttgtgatgggagagatagtgttgaagaaatctacaatttcttcttgtctaaattattcgactcctacaacacaagtgttgtatttgtcaactg |
109 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45697371 |
ataatccttgagatgggagagatagtgttgaagaaatctacaatttcttcttgtctaaattatttgactcctacaacacaagtgttgtatttgtcaactg |
45697470 |
T |
|
| Q |
110 |
ttccatcgagttttagtttcttttttaaaattcatttacaatctaatggttagcaacaaggaggaaaattcattaaatgatagatcttgtttgactctaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45697471 |
ttccatcgagttttagtttcttttttaaaatccatttacaatctaatggttagcaacaaggaggaaaattcattaaatgatagatcttgtttgattctaa |
45697570 |
T |
|
| Q |
210 |
ccatttagggcttttggccacaaatatgcattcaaggaagagaaaaactt----------------atcttactctaatgtatagagcatgtaatcgagt |
293 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45697571 |
ccatttagggcttctggccacaaatatgcattcaaggaagacaaaaacttcttggaggtttgtttgatcttactctaatgtatagagcatgtaatcgagt |
45697670 |
T |
|
| Q |
294 |
ccataatcttttgcaactcttgctttttcacgtcttctaggttctatttcatcttgcctaatgttcacaatgctcatgatcacgagaatgcatcagt |
390 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45697671 |
ccataatcttttgcaactcttgctctttcacctcttctaggttctatttcatcttgcctaatgttcaaaatgctcatgatcacgagaatgcatcagt |
45697767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 14386529 - 14386455
Alignment:
| Q |
270 |
aatgtatagagcatgtaatcgagtccataatcttttgcaactcttgctttttcacgtcttctaggttctatttca |
344 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||| | || ||||||| ||| | ||||||| ||||||||||| |
|
|
| T |
14386529 |
aatgtgtagaccatgaaatcgagtccataatctttagaaattcttgctattttgcttcttctatgttctatttca |
14386455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 40036589 - 40036517
Alignment:
| Q |
94 |
ttgtatttgtcaactgttccatcgagttttagtttcttttttaaaattcatttacaatctaatggttagcaac |
166 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||| | | ||| ||||||||| ||| ||||| ||||| |
|
|
| T |
40036589 |
ttgtatttatcaactgttccatcggatttcagtttctttctcataatacatttacaacctattggtttgcaac |
40036517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 14363656 - 14363689
Alignment:
| Q |
117 |
gagttttagtttcttttttaaaattcatttacaa |
150 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
14363656 |
gagttttagtttctttttgaaaattcatttacaa |
14363689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University