View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1130_low_18 (Length: 375)

Name: NF1130_low_18
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1130_low_18
NF1130_low_18
[»] chr6 (8 HSPs)
chr6 (121-312)||(22204731-22204919)
chr6 (122-312)||(20086245-20086435)
chr6 (125-322)||(20238161-20238358)
chr6 (125-322)||(22132145-22132342)
chr6 (122-349)||(24384904-24385131)
chr6 (122-293)||(20205565-20205736)
chr6 (122-312)||(21972129-21972316)
chr6 (122-293)||(22099588-22099759)
[»] chr4 (1 HSPs)
chr4 (11-130)||(21006613-21006732)
[»] scaffold0264 (1 HSPs)
scaffold0264 (122-322)||(16194-16394)
[»] scaffold0074 (1 HSPs)
scaffold0074 (122-322)||(47547-47747)
[»] scaffold0007 (1 HSPs)
scaffold0007 (122-187)||(5203-5268)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 121 - 312
Target Start/End: Complemental strand, 22204919 - 22204731
Alignment:
Q  121 aagacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaat 220  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22204919 aagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaat 22204820  T
Q  221 ttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgtt 312  Q
    ||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22204819 ttcttg---ttgtcagcagtaagtggacctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttctgtgtt 22204731  T

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Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 122 - 312
Target Start/End: Original strand, 20086245 - 20086435
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt 221  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  20086245 agacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctagacagtaaagggtctgagattcagaaatccttgcttcttttgtggcaaact 20086344  T
Q  222 tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgtt 312  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  20086345 tcttgttgttgtcagtagtaagtggacctgctgcttcctctgcagttttatccatcgtcgaaaacaataaaggcatgaagctttctgtgtt 20086435  T

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Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 125 - 322
Target Start/End: Original strand, 20238161 - 20238358
Alignment:
Q  125 caggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttct 224  Q
    ||||||||||||||| |    |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| |  |||| | |||||||| |||     
T  20238161 caggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcg 20238260  T
Q  225 tgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgttg 322  Q
    |||  |||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20238261 tgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgttagatacgttg 20238358  T

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Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 125 - 322
Target Start/End: Original strand, 22132145 - 22132342
Alignment:
Q  125 caggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttct 224  Q
    ||||||||||||||| |    |||||||| ||||||||||||||||| |||||||| || |||||||||||||||| |  |||| | |||||||| |||     
T  22132145 caggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcg 22132244  T
Q  225 tgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgttg 322  Q
    |||  |||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22132245 tgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtcgaaaacaatataggcatgaagctttttgtgttagatacgttg 22132342  T

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Target: chr6; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 122 - 349
Target Start/End: Complemental strand, 24385131 - 24384904
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt 221  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||   ||||||| |||| | | |  ||||    ||| ||  |||||| ||| |    
T  24385131 agacaggttctgcaatcattaggggacaagtctggcgtgcactgagctaaatagtaaagcgtctaaaaatttgaaacagatgcatcacttgtggaaaact 24385032  T
Q  222 tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgtt 321  Q
    |||||||||||  ||||||||||||| || ||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||||||| |||    
T  24385031 tcttgttgttgcaagcagtaagtggacctactgcttcctctgcagttatattcattgtcgaaaataataaagccatgaagctttttgtgttagatatgtt 24384932  T
Q  322 gcctacgttccacatgtaaagccaagga 349  Q
    |||| |||||||||||||||||| ||||    
T  24384931 gcctgcgttccacatgtaaagcccagga 24384904  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 293
Target Start/End: Original strand, 20205565 - 20205736
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctt-tgcttcttttgtggcaaat 220  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||  ||| | |||||| ||||||||| || |||||     
T  20205565 agacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttctttggttgcaaac 20205663  T
Q  221 ttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaag 293  Q
    |||| ||| |||||| || ||||||||  ||||||||| ||| |||||  |||||| || | |||||||||||    
T  20205664 ttctcgtttttgtcaccaataagtggacttgctgcttcatctacagttcgattcatggttgtaaacaataaag 20205736  T

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Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 312
Target Start/End: Original strand, 21972129 - 21972316
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt 221  Q
    |||||||||||||||||| |||| ||||| ||| |||||||||||||||| | |||||||||||||  ||| ||||    |||||||||||| |||||      
T  21972129 agacaggttctgcaatcattaggcgacaaatccagcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaa-- 21972226  T
Q  222 tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgtt 312  Q
     |||||| |||||| || |||| |||  ||||||||| |||||||||  |||||| || ||||||||||||| || ||||||||| |||||    
T  21972227 -cttgttcttgtcaccactaagcggacttgctgcttcgtctgcagttcgattcatggttgaaaacaataaagacacgaagcttttcgtgtt 21972316  T

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Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 293
Target Start/End: Original strand, 22099588 - 22099759
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctt-tgcttcttttgtggcaaat 220  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||  ||| | |||||| ||||||||| || |||||     
T  22099588 agacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctgattttccg-aatcttgtgcttctttggttgcaaac 22099686  T
Q  221 ttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaag 293  Q
    |||| ||| |||||| || ||||||||  ||||||||| ||| |||||  |||||| || | |||||||||||    
T  22099687 ttctcgtttttgtcaccaataagtggacttgctgcttcatctacagttcgattcatggttgtaaacaataaag 22099759  T

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Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 21006732 - 21006613
Alignment:
Q  11 ttatactacaaaacgcggaggcttgaaaatggtcactatcttgactagactagtagcagttactatacacacccccatagttcaaaacattaggcaggtt 110  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21006732 ttattctacaaaacgaggaggcttgaaaatggtcactatcttgactagactagtagcagttactatacacacccccatagttcaaaacattaggcaggtt 21006633  T
Q  111 tctactaaaaaagacaggtt 130  Q
    ||||||||||||||||||||    
T  21006632 tctactaaaaaagacaggtt 21006613  T

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Target: scaffold0264 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 322
Target Start/End: Original strand, 16194 - 16394
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt 221  Q
    ||||||||||||||||   |||| |||||||| ||||||||||||||||| ||||| |||||||||  ||  ||||    |||||||||||| ||||| |    
T  16194 agacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtatagggtctgatttttcgaaactcgtgcttcttttgttgcaaact 16293  T
Q  222 tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgtt 321  Q
    |||| ||  ||||  || ||||||||  ||||||||| ||||||||||  | |   || |||||||||||||||||||||||||| ||||| || |||||    
T  16294 tcttttttatgtctccaataagtggacgtgctgcttcatctgcagtttcgtaccaggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgtt 16393  T
Q  322 g 322  Q
    |    
T  16394 g 16394  T

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Target: scaffold0074 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 322
Target Start/End: Complemental strand, 47747 - 47547
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatt 221  Q
    ||||||||||||||||   |||| |||||||| ||||||||||||||||| ||||||||||||||   ||  ||||    |||||||||||| ||||| |    
T  47747 agacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaact 47648  T
Q  222 tcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaacaataaaggcatgaagctttttgtgttagatacgtt 321  Q
    |||| ||  | ||  || ||||||||  ||||||||| ||||||||||  | |   || |||||||||||||||||||||||||| ||||| || |||||    
T  47647 tcttttttatatctccaataagtggacgtgctgcttcatctgcagtttcgtacccggttgaaaacaataaaggcatgaagcttttcgtgtttgagacgtt 47548  T
Q  322 g 322  Q
    |    
T  47547 g 47547  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 5268 - 5203
Alignment:
Q  122 agacaggttctgcaatcactaggggacaagtccggcgtgcactgagctaggcagtaaagggtctga 187  Q
    ||||||||||||||||   |||||||||||||||||||||||||  |||| ||||| |||||||||    
T  5268 agacaggttctgcaattgttaggggacaagtccggcgtgcactgttctagacagtacagggtctga 5203  T

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