View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1130_low_19 (Length: 360)
Name: NF1130_low_19
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 2866540 - 2866795
Alignment:
| Q |
12 |
gaaaaaggcataagaaacataaaagttacaac--ataaatcactccacactggagttaaacaattttcaagtgaataacaagaaaataactatatgatcc |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866540 |
gaaaaagacataagaaacataaaagttacagctcataaatcactccacactggagttaaacaattttcaagtgaataacaagaaaataactatatgatcc |
2866639 |
T |
|
| Q |
110 |
tcccaataaaacaaaatttacacaaatcctatttcacacaaaaatcttaactacactgaccaatattcataatcatagcttgaggtttaaatcaagttgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866640 |
tcccaataaaacaaaatttacacaaatcctatttcacacaaaaatcttaactacactgaccaatattcataatcatagcttgaggtttaaatcaagttgc |
2866739 |
T |
|
| Q |
210 |
ttctgcttcatttctttattagctgcagaattcaacatagtatctaccacttcaaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2866740 |
ttctgcttcatttctttattagctgcagaattcatcatagtatctaccacttcaaa |
2866795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University