View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1130_low_2 (Length: 675)

Name: NF1130_low_2
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1130_low_2
NF1130_low_2
[»] chr3 (1 HSPs)
chr3 (93-660)||(15761622-15762183)
[»] chr5 (3 HSPs)
chr5 (437-658)||(5671989-5672208)
chr5 (288-383)||(5671293-5671388)
chr5 (342-386)||(13755907-13755951)
[»] chr7 (5 HSPs)
chr7 (437-658)||(13342432-13342652)
chr7 (437-658)||(13331517-13331737)
chr7 (288-383)||(13330846-13330941)
chr7 (288-383)||(13341761-13341856)
chr7 (450-556)||(33430229-33430336)
[»] chr2 (2 HSPs)
chr2 (436-672)||(26661410-26661646)
chr2 (450-556)||(6049931-6050037)
[»] chr6 (2 HSPs)
chr6 (436-672)||(21481328-21481564)
chr6 (436-568)||(19701165-19701298)
[»] chr8 (2 HSPs)
chr8 (436-565)||(32717808-32717938)
chr8 (436-565)||(10637656-10637786)
[»] scaffold0586 (1 HSPs)
scaffold0586 (436-568)||(9598-9731)
[»] chr1 (2 HSPs)
chr1 (436-568)||(22893808-22893941)
chr1 (450-556)||(44306148-44306253)
[»] chr4 (1 HSPs)
chr4 (450-556)||(13893703-13893809)


Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 93 - 660
Target Start/End: Original strand, 15761622 - 15762183
Alignment:
93 agcaattacaaaaggtccaagactcactataaaccaaaactgatggcagcagaaacaaccaaccgttggcaaatagcagtccaggataaaataaaagcct 192  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
15761622 agcaattacaaaaggtccaagactcacta--aaccaaaactgatggcagcagaaacagccaaccgttagcaaatagcagtccaggataaaataaaagcct 15761719  T
193 agaattacaaaaacgcagcaaacnnnnnnnctagcagtaccaaaacaacctcccacccaatcgtaacaaacaaagcataatttgcacggcttctatatct 292  Q
    |||| ||||||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
15761720 agaactacaaaaacgcagcaaacaaaaaaactagcagtaccaaaacaacctcccacccaaccgtaacaaacaaagcataatttgcacggcttctatatct 15761819  T
293 actatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgttcaatgttga 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
15761820 actatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattttgttcaatgttga 15761919  T
393 gacaaggcaataaacaacaatagcagaaagaaagnnnnnnnnncagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaa 492  Q
    |||||||||||||||||||||||||| ||||||          |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
15761920 gacaaggcaataaacaacaatagcag-aagaaa---aaaaaaacagagaaaatataccaatcaccaaatctatgttgagtaatagaagaattgagatgaa 15762015  T
493 attagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaag 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||     
15762016 attagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttgatgaacatacaaagatcatatgatgttttttatatagaagaac 15762115  T
593 atgagtgaaaatgtttagcgggaatcagagaaaaagaatggcgggaatgacaaggataaaaatggtat 660  Q
    |||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||||    
15762116 atgagtgaaaatgtttagtgggaatcagagaaaaagaatggcacgaatgacaaggacaaaaatggtat 15762183  T

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Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 437 - 658
Target Start/End: Original strand, 5671989 - 5672208
Alignment:
437 agagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaat 536  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  |||    
5671989 agagaaattttaccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaat 5672088  T
537 tagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcgg 636  Q
     ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||||||||||||||  ||||||| ||||    
5672089 cagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgg 5672186  T
637 gaatgacaaggataaaaatggt 658  Q
    |||||||||||  |||||||||    
5672187 gaatgacaagggcaaaaatggt 5672208  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 5671293 - 5671388
Alignment:
288 tatctactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 383  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
5671293 tatcttctatttcaatttgttattttaaatggaaaaaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 5671388  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 13755907 - 13755951
Alignment:
342 aaagatctataaatcctactcatagaccaaagatattctgttcaa 386  Q
    |||||||||||||||  |||||||||||||||||||| |||||||    
13755907 aaagatctataaatctcactcatagaccaaagatattatgttcaa 13755951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 437 - 658
Target Start/End: Original strand, 13342432 - 13342652
Alignment:
437 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 535  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  ||    
13342432 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaa 13342531  T
536 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 635  Q
    | ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||||||||||||||  ||||||| |||    
13342532 tcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcg 13342629  T
636 ggaatgacaaggataaaaatggt 658  Q
    ||||||||||||  |||||||||    
13342630 ggaatgacaagggcaaaaatggt 13342652  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 437 - 658
Target Start/End: Original strand, 13331517 - 13331737
Alignment:
437 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 535  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  ||    
13331517 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaa 13331616  T
536 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 635  Q
    | ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| ||||||||||||||||||||||||||  ||||||| |||    
13331617 tcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcg 13331714  T
636 ggaatgacaaggataaaaatggt 658  Q
    |||||| |||||  |||||||||    
13331715 ggaatggcaagggcaaaaatggt 13331737  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 13330846 - 13330941
Alignment:
288 tatctactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 383  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
13330846 tatcttctatttcaatttgttattttaaatggaaaaaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 13330941  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 13341761 - 13341856
Alignment:
288 tatctactatttcaatttgttattttaaatggaagaaaattacagggttgaagtaaagatctataaatcctactcatagaccaaagatattctgtt 383  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
13341761 tatcttctatttcaatttgttattttaaatggaaaaaaattgcagggttgcaggaaagatctataaatcctactcataggccaaagatattttgtt 13341856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 450 - 556
Target Start/End: Original strand, 33430229 - 33430336
Alignment:
450 caatcaccaaatctatgttgagtaatggaagaattgagatgaaa-ttagatggtactttgaaaagaatagtgaaa-tcaaaacccaaattagcaaacagt 547  Q
    |||||| |||||||| ||||||||||||||  ||| | |  ||| ||||||||||| ||||| |||||||||||| |||||| ||||| ||||||||| |    
33430229 caatcatcaaatctacgttgagtaatggaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaa-tagcaaacact 33430327  T
548 tgatgaaca 556  Q
    |||||||||    
33430328 tgatgaaca 33430336  T

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Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 436 - 672
Target Start/End: Complemental strand, 26661646 - 26661410
Alignment:
436 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 535  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || ||    
26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 26661547  T
536 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 635  Q
    || |||| ||||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| |||    
26661546 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg 26661447  T
636 ggaatgacaaggataaaaatggtatattcttggagat 672  Q
    |||||| ||||| || ||  ||||| || ||||||||    
26661446 ggaatggcaagggtagaagaggtattttgttggagat 26661410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 450 - 556
Target Start/End: Complemental strand, 6050037 - 6049931
Alignment:
450 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 549  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||    
6050037 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 6049938  T
550 atgaaca 556  Q
    |||||||    
6049937 atgaaca 6049931  T

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Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 436 - 672
Target Start/End: Complemental strand, 21481564 - 21481328
Alignment:
436 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 535  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || ||    
21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa 21481465  T
536 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagcgggaatcagagaaaaagaatggcg 635  Q
    || ||||  |||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| ||     
21481464 ttggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagca 21481365  T
636 ggaatgacaaggataaaaatggtatattcttggagat 672  Q
    |||||| ||||| || ||  ||||| || ||||||||    
21481364 ggaatggcaagggtagaagaggtattttgttggagat 21481328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 436 - 568
Target Start/End: Complemental strand, 19701298 - 19701165
Alignment:
436 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc-aaaacccaa 534  Q
    ||||||||| |||  ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| ||||||||| ||||| |||    
19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
535 attagcaaacagttgatgaaca-tacaaagatcat 568  Q
    || ||||| ||||||||||||| ||||||||||||    
19701198 at-agcaagcagttgatgaacactacaaagatcat 19701165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 436 - 565
Target Start/End: Original strand, 32717808 - 32717938
Alignment:
436 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 534  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||    
32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 32717907  T
535 attagcaaacagttgatgaaca-tacaaagat 565  Q
    |  ||||| ||||||||||||| |||||||||    
32717908 a-cagcaagcagttgatgaacactacaaagat 32717938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 436 - 565
Target Start/End: Complemental strand, 10637786 - 10637656
Alignment:
436 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 534  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||| |||||| |||    
10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa 10637687  T
535 attagcaaacagttgatgaaca-tacaaagat 565  Q
    |  ||||| ||||||||||||| |||||||||    
10637686 a-cagcaagcagttgatgaacactacaaagat 10637656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 436 - 568
Target Start/End: Complemental strand, 9731 - 9598
Alignment:
436 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 534  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||    
9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
535 attagcaaacagttgatgaaca-tacaaagatcat 568  Q
    |  | ||| ||||||||||||| ||||||||||||    
9631 a-caacaagcagttgatgaacactacaaagatcat 9598  T

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Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 436 - 568
Target Start/End: Complemental strand, 22893941 - 22893808
Alignment:
436 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 534  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||| |||||| |||    
22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa 22893842  T
535 attagcaaacagttgatgaaca-tacaaagatcat 568  Q
    |  ||||| ||||||||||||| ||||||||||||    
22893841 a-cagcaagcagttgatgaacactacaaagatcat 22893808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 450 - 556
Target Start/End: Complemental strand, 44306253 - 44306148
Alignment:
450 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 549  Q
    |||| |||||||||||||||||||||||||||||||| | | |||| |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||    
44306253 caatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 44306155  T
550 atgaaca 556  Q
    |||||||    
44306154 atgaaca 44306148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 556
Target Start/End: Original strand, 13893703 - 13893809
Alignment:
450 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 549  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| || ||| ||||||    
13893703 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaagcagttg 13893802  T
550 atgaaca 556  Q
    |||||||    
13893803 atgaaca 13893809  T

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