View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1130_low_20 (Length: 359)
Name: NF1130_low_20
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_20 |
 | |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (6 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Original strand, 9440460 - 9440750
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440460 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
9440559 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440560 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
9440659 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440660 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
9440750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 24594878 - 24595150
Alignment:
| Q |
87 |
atcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccg |
186 |
Q |
| |
|
|||||| ||||||||| |||||| || |||||||||| || || |||| ||||||||||||| ||| |||||| | |||||| |||||||||||||| || |
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|
| T |
24594878 |
atcctctgaaacataatgcaacatctaaggttccttttatatatctcaggattctcttaacaacatcccaatgttttttaccaggatccgccataaatcg |
24594977 |
T |
|
| Q |
187 |
actaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttcc |
286 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
24594978 |
actaaccgctcccactgcttgtgcaatgtctggccttgtaaatatcatggcatacataaggcttcccaccgctgatgcatagggtactcgagacatttcc |
24595077 |
T |
|
| Q |
287 |
atcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||| |||||||| |||| | ||||||||||||||| |||| |
|
|
| T |
24595078 |
atcctctctgcttcattgctaggattcatactggagaataatttataattgataggaagtggggtagatattg |
24595150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Original strand, 26977262 - 26977552
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977262 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
26977361 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977362 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
26977461 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977462 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
26977552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Original strand, 27875078 - 27875368
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875078 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
27875177 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875178 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
27875277 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875278 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
27875368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 1472851 - 1473123
Alignment:
| Q |
87 |
atcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccg |
186 |
Q |
| |
|
|||||| ||||||||| |||||| || |||||||||| || || |||| ||||||||||||||||| ||||||||||||||| |||||||||||||| || |
|
|
| T |
1472851 |
atcctctgaaacataatgcaacatctaaggttccttttatatatctcaggattctcttaacagcatcccaatgctctttaccaggatccgccataaatcg |
1472950 |
T |
|
| Q |
187 |
actaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttcc |
286 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
1472951 |
actaaccgctcccactgcttgtgcaatgtctgaccttgtacatatcatggcatacataaggcttcccaccgctgatgcatagggtactcgagacatttcc |
1473050 |
T |
|
| Q |
287 |
atcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || ||||||||| |||| | ||||||||||||||| |||| |
|
|
| T |
1473051 |
atcctctctgcttcattgctaggattcataccggaagataatttataattgataggaagtggggtagatattg |
1473123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 114 - 359
Target Start/End: Complemental strand, 21965294 - 21965051
Alignment:
| Q |
114 |
aggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaat |
213 |
Q |
| |
|
|||||||||||||||||||| || |||| ||| || ||||| |||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21965294 |
aggttcctttaatgtacctcttg-ttcttttaccaacattctgatgctctttacc-gaatctgccataaaccgactaactactcccactgcttgtgcaat |
21965197 |
T |
|
| Q |
214 |
gtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactc |
313 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| ||||| || ||||| |||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
21965196 |
gtctggtcttttacatatcatgacatacataaggcttccaaccgcgaatatatacgatactcgagacattttcatcctctcttcttcattgttaggactc |
21965097 |
T |
|
| Q |
314 |
atacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21965096 |
ataccgaaggataatttaaaattcacaagaagtggggtagagattg |
21965051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Complemental strand, 41722358 - 41722068
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722358 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
41722259 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722258 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
41722159 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722158 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
41722068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 69 - 359
Target Start/End: Complemental strand, 34355958 - 34355668
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355958 |
ccctgacagttaactctgatcctccgaaacatactgcaacacctaaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
34355859 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355858 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
34355759 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355758 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
34355668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Original strand, 30946552 - 30946842
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946552 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
30946651 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946652 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
30946751 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946752 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
30946842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Complemental strand, 42269851 - 42269561
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269851 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
42269752 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269751 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
42269652 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269651 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
42269561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Original strand, 48698190 - 48698480
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698190 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
48698289 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698290 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
48698389 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698390 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
48698480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 87 - 359
Target Start/End: Complemental strand, 2002813 - 2002541
Alignment:
| Q |
87 |
atcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccg |
186 |
Q |
| |
|
|||||| ||||||||| |||||| || |||||||||| || || |||| ||||||||||||||||| ||||||||||||||| |||||||||||||| || |
|
|
| T |
2002813 |
atcctctgaaacataatgcaacatctaaggttccttttatatatctcaggattctcttaacagcatcccaatgctctttaccaggatccgccataaatcg |
2002714 |
T |
|
| Q |
187 |
actaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttcc |
286 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
2002713 |
actaaccgctcccactgcttgtgcaatgtctggccttgtacatatcatggcatacataaggcttcccaccactgatgcatagggtactcgagacatttcc |
2002614 |
T |
|
| Q |
287 |
atcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||||||||||| |||| | ||||||||||||||| |||| |
|
|
| T |
2002613 |
atcctctctgcttcattgctaggattcatactggaggataatttataattgataggaagtggggtagatattg |
2002541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 69 - 359
Target Start/End: Original strand, 5819644 - 5819934
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819644 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
5819743 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819744 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
5819843 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819844 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
5819934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 69 - 359
Target Start/End: Complemental strand, 54545093 - 54544803
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54545093 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgtacctcatgattctcttaacaacattccaatgctctttacc |
54544994 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54544993 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
54544894 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54544893 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
54544803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 87 - 359
Target Start/End: Complemental strand, 42588878 - 42588606
Alignment:
| Q |
87 |
atcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccg |
186 |
Q |
| |
|
|||||| || |||||| |||||| || |||||||||| || || |||| ||||||||||||||||| |||||| |||||||| |||||||||||||| || |
|
|
| T |
42588878 |
atcctctgacacataatgcaacatctaaggttccttttatatatctcaggattctcttaacagcatcccaatgttctttaccaggatccgccataaatcg |
42588779 |
T |
|
| Q |
187 |
actaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttcc |
286 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
42588778 |
actaaccgctcccactgcttgtgcaatgtctggccttgtacatatcatggcatacataaggcttcccaccactgatgcatagggtactcgagacatttct |
42588679 |
T |
|
| Q |
287 |
atcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||||| |||| | ||||||||||||||| |||| |
|
|
| T |
42588678 |
atcctctctgattcattgctaggattcatactggaggataatttataattgataggaagtggggtagatattg |
42588606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 94 - 293
Target Start/End: Complemental strand, 25880578 - 25880379
Alignment:
| Q |
94 |
gaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaacc |
193 |
Q |
| |
|
||||||||| ||||| ||||||||||||| || || |||| |||||| || | | ||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
25880578 |
gaaacataatacaacatctgaggttccttttatatatctcaggattcttttgataccatcccaatgctctttaccaggatccgccataaatcgactaatt |
25880479 |
T |
|
| Q |
194 |
actcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctct |
293 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
25880478 |
acttccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgctgatgcataaggtactcgagacattttcatcctct |
25880379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 359
Target Start/End: Complemental strand, 25878161 - 25877957
Alignment:
| Q |
155 |
caatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttccca |
254 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
25878161 |
caatgctctttaccaggatccgccataaatcgactaattgttctcactgcttgtgcaatgtctagtcttgtacatatcatgtcatacataagacttccca |
25878062 |
T |
|
| Q |
255 |
ccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtaga |
354 |
Q |
| |
|
| || |||||||| |||||| ||||||||| |||||||||| |||||||||||||| ||| || ||||||||||||| |||| | || || ||||||||| |
|
|
| T |
25878061 |
ctgctgatgcatagggtacttgagacattttcatcctctccgcttcattgctaggattcagacttgaggataatttataattgatagaaaatggggtaga |
25877962 |
T |
|
| Q |
355 |
gattg |
359 |
Q |
| |
|
|||| |
|
|
| T |
25877961 |
tattg |
25877957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 277
Target Start/End: Complemental strand, 25880769 - 25880583
Alignment:
| Q |
94 |
gaaacataacgcaacacctgaggttcc---tttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgacta |
190 |
Q |
| |
|
||||||||| |||||| |||||||| | ||| || || |||| |||||| |||| | ||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
25880769 |
gaaacataatgcaacatctgaggtttccttttttatatatctcacgattcttttaataacatctcaatgctctttaccaggatccgccataaatcgacta |
25880670 |
T |
|
| Q |
191 |
accactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcga |
277 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
25880669 |
attgctcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggtttcccaccgctgatgcataaggtactcga |
25880583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 69 - 359
Target Start/End: Complemental strand, 829427 - 829137
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
829427 |
ccctgacagttaactctgatcctccgaaacataccgcaacacctggggttcctttaatgtacctcatgattctcttaacaacattccaatgctctttacc |
829328 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829327 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
829228 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829227 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
829137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 72 - 359
Target Start/End: Complemental strand, 28715028 - 28714741
Alignment:
| Q |
72 |
tgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccgg |
171 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
28715028 |
tgacaattaactctgatcctccgaaacatattgcaacacatgaggttcctttaatgtacctcatgattctcttaacaacattccaatgctctttataagg |
28714929 |
T |
|
| Q |
172 |
atccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggt |
271 |
Q |
| |
|
||| | ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28714928 |
atctgtcataaaccgactaaccactcccactaattgtgcaatctctgatcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggt |
28714829 |
T |
|
| Q |
272 |
actcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
| ||||||||||| ||||||||| ||||||||||||||||||||| || ||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
28714828 |
attcgagacatttacatcctctctgcttcattgctaggactcatacatgtggatagtttaaaattcatagaaagtggggtagagattg |
28714741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 78 - 358
Target Start/End: Original strand, 13841297 - 13841576
Alignment:
| Q |
78 |
ttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgc |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||| |||| || || |||| |||| |||||| ||| || | | |||||| |||| || |
|
|
| T |
13841297 |
ttaactctgatcctccgaaacatattgcaacacttgaggtttctttgatatatctcaaaattcatttaacaa-atttaaaggatatttaccaggatatgc |
13841395 |
T |
|
| Q |
178 |
cataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcga |
277 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
13841396 |
cataaaccgactaaccactcccactatttgtgtagtgtctggtcttgtacatatcatggaatacataaggctttccaccatcaatgcatacggtactcga |
13841495 |
T |
|
| Q |
278 |
gacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagatt |
358 |
Q |
| |
|
||||| ||||||||| | |||||||| |||||||| |||||| | |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13841496 |
gacatctccatcctcactacttcatttctaggactgatacctacgaataatttaaaattcacaggaagtgaggtagagatt |
13841576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 69 - 359
Target Start/End: Original strand, 28404 - 28694
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28404 |
ccctgacagttaactctgatcctctgaaacatattgcaacatccgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
28503 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28504 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
28603 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28604 |
ggtactcgagacatttccatcctctccgcttcattgctaggactcatacatgaggataatttaaaattcacaagaagtggggtagagattg |
28694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 140 - 359
Target Start/End: Original strand, 7506016 - 7506235
Alignment:
| Q |
140 |
ctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcat |
239 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7506016 |
ctcttaacaacatcccaatgctctttaccaggatccgccataaattgactagccgctcccactgcttgtgcaatgtctggccttgtacatatcatggcat |
7506115 |
T |
|
| Q |
240 |
acataaggcttcccaccgccgatgcatacggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcac |
339 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||| |||| | |
|
|
| T |
7506116 |
acataaggcttcccaccgctgatgcatagggtactcgagacatttccatcctatctacttcattgctaggattcatactagaggataatttataattgat |
7506215 |
T |
|
| Q |
340 |
aggaagtggggtagagattg |
359 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
7506216 |
aggaagtggggtagatattg |
7506235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 77 - 355
Target Start/End: Original strand, 2324484 - 2324740
Alignment:
| Q |
77 |
gttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccg |
176 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2324484 |
gttaactctgatcctccgaaacatattgcaacacctgaggttccttttatatacatcatgattctcttaacagcattccaatgctctttaccaagatccg |
2324583 |
T |
|
| Q |
177 |
ccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatacggtactcg |
276 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||| |||| |||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
2324584 |
ccataaaccgaccaacca----------------------tggtcttgtgcataccatgacatacaaaaggcttcccaccacctatgcatacggtactcg |
2324661 |
T |
|
| Q |
277 |
agacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagag |
355 |
Q |
| |
|
||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2324662 |
agatatttccatcctctctgcttcattactaggactcatacttgaggataatttaaaattcaaaggaagtggggtagag |
2324740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 7505150 - 7505210
Alignment:
| Q |
87 |
atcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaac |
147 |
Q |
| |
|
|||||| ||||||||| |||||| || |||||||||| || || |||| |||||||||||| |
|
|
| T |
7505150 |
atcctctgaaacataatgcaacatctaaggttccttttatatatctcaggattctcttaac |
7505210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 69 - 359
Target Start/End: Complemental strand, 34973482 - 34973192
Alignment:
| Q |
69 |
ccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacc |
168 |
Q |
| |
|
|||| |||||||| | |||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||| | ||| |||| ||||||||||| |
|
|
| T |
34973482 |
ccctaacagttaaatttgatcctccgaatcatattgcaacacctgaggttcctttattgtacctcataattctatcgacatcattttgatgctctttact |
34973383 |
T |
|
| Q |
169 |
cggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgccgatgcatac |
268 |
Q |
| |
|
|||||| ||| |||| |||||||||||| | ||| |||| |||||||| ||||||||||||| | | ||||||||||||||| || |||||||||||| |
|
|
| T |
34973382 |
aggatcctccacaaactgactaaccactctcgctgtttgttcaatgtcttgtcttgtacatataaagacatacataaggcttctcattgccgatgcatac |
34973283 |
T |
|
| Q |
269 |
ggtactcgagacatttccatcctctccacttcattgctaggactcatacctgaggataatttaaaattcacaggaagtggggtagagattg |
359 |
Q |
| |
|
||||||| ||||||||| | ||| ||| |||||||| |||||||||||| |||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
34973282 |
ggtactcaagacatttctaccctatccgcttcattgttaggactcatacatgaggataatttaaaactcactggaagtagggtagagattg |
34973192 |
T |
|
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