View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_29 (Length: 292)
Name: NF1130_low_29
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_29 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 97785 - 97943
Alignment:
| Q |
60 |
aaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacatattacccttcctgtagcaagaattttgnnnnnnnnnntc |
159 |
Q |
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| T |
97785 |
aaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacacattacccttcctgtagcaagaattttg-aaaaaaaaatc |
97883 |
T |
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| Q |
160 |
ccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggc |
219 |
Q |
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| T |
97884 |
ccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggc |
97943 |
T |
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Target: scaffold0041; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 89935 - 90021
Alignment:
| Q |
62 |
aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacatattacccttcctgtagcaagaattttg |
147 |
Q |
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| T |
89935 |
aaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaagaattttg |
90021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 40868497 - 40868339
Alignment:
| Q |
60 |
aaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacatattacccttcctgtagcaagaattttgnnnnnnnnnntc |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
40868497 |
aaaaaaccaccagttaaacttagagctgaatgatcaaattactctattaccaatttgacacattacccttcctgtagcaagaattttg-aaaaaaaaatc |
40868399 |
T |
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| Q |
160 |
ccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggc |
219 |
Q |
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| T |
40868398 |
ccttttctttaggattatataatatcactttaaatatgattagttttataggaatttggc |
40868339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 40876348 - 40876262
Alignment:
| Q |
62 |
aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacatattacccttcctgtagcaagaattttg |
147 |
Q |
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||||||||||||| || | |||||||| ||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
40876348 |
aaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaagaattttg |
40876262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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