View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_32 (Length: 278)
Name: NF1130_low_32
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 26790934 - 26790813
Alignment:
| Q |
34 |
aggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgatgtta |
133 |
Q |
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| T |
26790934 |
aggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgatgtta |
26790835 |
T |
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| Q |
134 |
cattggttttattttaatatat |
155 |
Q |
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| T |
26790834 |
cattggttttattttaatatat |
26790813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 26784608 - 26784554
Alignment:
| Q |
34 |
aggatggaaattcctatatctctccaatttacaggttccattttcttaatccaat |
88 |
Q |
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| T |
26784608 |
aggatggaaattcttatacctctccaatatacaggttccatttacttaattcaat |
26784554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 26831321 - 26831263
Alignment:
| Q |
25 |
cagtatcataggatggaaattcctatatctctccaatttacaggttccattttcttaat |
83 |
Q |
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| T |
26831321 |
cagtctcaaaggatggaaattcttatacctctccgatttgcaggttcgattttcttaat |
26831263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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