View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1130_low_37 (Length: 266)

Name: NF1130_low_37
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1130_low_37
NF1130_low_37
[»] chr1 (4 HSPs)
chr1 (105-256)||(32592496-32592647)
chr1 (105-198)||(31527319-31527412)
chr1 (126-252)||(51824717-51824843)
chr1 (105-256)||(37030677-37030828)
[»] chr3 (5 HSPs)
chr3 (105-256)||(49208179-49208330)
chr3 (105-256)||(49191902-49192053)
chr3 (105-256)||(49188166-49188317)
chr3 (105-256)||(49203008-49203159)
chr3 (105-256)||(49213019-49213170)
[»] chr8 (1 HSPs)
chr8 (106-256)||(26756546-26756696)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 32592647 - 32592496
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32592647 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcttcgacttcagc 32592548  T
Q  205 cacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32592547 cacttgagccgccttagtccaagccgctttcttcttcgccaactcagaatta 32592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 31527319 - 31527412
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31527319 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgac 31527412  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 51824717 - 51824843
Alignment:
Q  126 tcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtcca 225  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  51824717 tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca 51824816  T
Q  226 agctgctttcttcttcgccaactcaga 252  Q
    ||| ||||||||| |||||||||||||    
T  51824817 agccgctttcttcatcgccaactcaga 51824843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 37030677 - 37030828
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagc 204  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||   |||||| ||    ||||||||||||||    
T  37030677 ctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagc 37030776  T
Q  205 cacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    ||| ||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  37030777 cacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 37030828  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 49208179 - 49208330
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |  |||||    
T  49208179 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacggctttagcagcctcaagctcagc 49208278  T
Q  205 cacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    ||||||||||||| | |||||||| ||||||||||| |||||||| ||||||    
T  49208279 cacttgagccgccattgtccaagcagctttcttcttagccaactcggaatta 49208330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 49191902 - 49192053
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagc 204  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| || ||||| |||||||| ||||| ||    
T  49191902 ctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcagcctcaacttcggc 49192001  T
Q  205 cacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  49192002 cacttgagccgccttagtccaagccgctttcttcttagccaattcagaatta 49192053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 49188166 - 49188317
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagc 204  Q
    |||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||    ||||||||||||||    
T  49188166 ctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagc 49188265  T
Q  205 cacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    ||| ||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  49188266 cacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 49188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 49203008 - 49203159
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagc 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||| || ||    ||||| ||||||||    
T  49203008 ctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcaccttgtaactcagcatcccttagagccacggccttcttcgcctcaacttcagc 49203107  T
Q  205 cacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    ||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  49203108 cacctgagccgccttagtccaagctgccttcttcttagccaactcagaatta 49203159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 49213019 - 49213170
Alignment:
Q  105 ctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagc 204  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||    ||||| ||||||||    
T  49213019 ctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagagccacagccttcttcgcctcaacttcagc 49213118  T
Q  205 cacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    ||| ||||||||||| |||||||| || ||||| || |||||||| ||||||    
T  49213119 cacctgagccgccttggtccaagcagccttctttttggccaactccgaatta 49213170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 26756546 - 26756696
Alignment:
Q  106 tttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagcc 205  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||     
T  26756546 tttaagcttctcagtggtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcg 26756645  T
Q  206 acttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 256  Q
    ||||||||||||||||||||||| ||||||||||| | |||||| ||||||    
T  26756646 acttgagccgccttagtccaagccgctttcttcttagtcaactcggaatta 26756696  T

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