View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_41 (Length: 254)
Name: NF1130_low_41
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 34143606 - 34143391
Alignment:
| Q |
1 |
ccttagtcaaagagatatcaagtgcttgcaaggaatggggtttcttccaagttacaaatcatggagtccctcccactctaaggctcaaaatggaagaagc |
100 |
Q |
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| T |
34143606 |
ccttagtcaaagagatatcaagtgcttgcaaggaatggggtttcttccaagttacaaatcatggtgtccctcccactctaaggctcaaaatggaagaagc |
34143507 |
T |
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| Q |
101 |
ttctaagatgttcttcgcacagagcctggaggataagaagaagattaccacagatgataccggtttgcctggttatcatgatacagagcacaccaagaat |
200 |
Q |
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| T |
34143506 |
ttctaagatgttcttcgcacagagcctggaggataagaagaagattaccacagatgataccggtttgcctggttatcatgatacagagcacaccaagaat |
34143407 |
T |
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| Q |
201 |
gtaagagactggaaag |
216 |
Q |
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| T |
34143406 |
gtaagagactggaaag |
34143391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 34133522 - 34133334
Alignment:
| Q |
28 |
gcaaggaatggggtttcttccaagttacaaatcatggagtccctcccactctaaggctcaaaatggaagaagcttctaagatgttcttcgcacagagcct |
127 |
Q |
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||||||| ||||||||||| ||||| ||||| |||||||||||| | |||||||| | | | || |||||||||| ||||||| || ||||| | |
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| T |
34133522 |
gcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttctttgctcagagttt |
34133423 |
T |
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| Q |
128 |
ggaggataagaagaagattaccacagatgataccggtttgcctggttatcatgatacagagcacaccaagaatgtaagagactggaaag |
216 |
Q |
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| T |
34133422 |
ggaggagaagaagaaggttgctagagatgaggtcaatcctactggttattatgatacagagcataccaaaaatgttagagactggaaag |
34133334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 34137441 - 34137245
Alignment:
| Q |
20 |
aagtgcttgcaaggaatggggtttcttccaagttacaaatcatggagtccctcccactctaaggctcaaaatggaagaagcttctaagatgttcttcgca |
119 |
Q |
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|||||| ||||| || ||||||||||||||||| ||||| |||||||||||| | | ||| |||| | | | || |||||| |||| ||||||| || |
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| T |
34137441 |
aagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgct |
34137342 |
T |
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| Q |
120 |
cagagcctggaggataagaagaagattaccacagatgataccggtttgcctggttatcatgatacagagcacaccaagaatgtaagagactggaaag |
216 |
Q |
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| T |
34137341 |
cagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaag |
34137245 |
T |
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