View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_43 (Length: 251)
Name: NF1130_low_43
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_43 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 41888352 - 41888113
Alignment:
| Q |
12 |
atgaaccagagtcttgagtacttctttgcttttgactctagaaaaggtggtgcacagctgaccattactgaaccttggtttaggtaaatataagcccaca |
111 |
Q |
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| T |
41888352 |
atgaaccagagtcttgagtacttctttgcttttgactctagaaaaggtggtgcacagctgaccattactgaaccttggtttaggtaaatataagcccaca |
41888253 |
T |
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| Q |
112 |
ttgtcgaatgagtgaccttgagatttgttgattgtcatagcatatgaaacaacaattgggaattgtcttctaactagcttgaaaggcaattttgattgcg |
211 |
Q |
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| T |
41888252 |
ttgtcgaatgagtgaccttgagatttgttgattgtcatagcatatgagacaacaattgggaattgtcttctaactagcttgaaaggtaattttgattgtg |
41888153 |
T |
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| Q |
212 |
aaggagacatatctaatcgaggaattaatatcagctcacc |
251 |
Q |
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| T |
41888152 |
aaggagacatatctaatcgaggaattaatatcagctcacc |
41888113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 41860444 - 41860212
Alignment:
| Q |
19 |
agagtcttgagtacttctttgcttttgactctagaaaaggtggtgcacagctgaccattactgaaccttggtttaggtaaatataagcccacattgtcga |
118 |
Q |
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| T |
41860444 |
agagtctcgagtccttgtttgcttttgactctagaaaaggtggtgcacagctgaccattactgaaccttggtttaggtaaatataagcccacattgtcga |
41860345 |
T |
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| Q |
119 |
atgagtgaccttgagatttgttgattgtcatagcatatgaaacaacaattgggaattgtcttctaactagcttgaaaggcaattttgattgcgaaggaga |
218 |
Q |
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| T |
41860344 |
atgagtgaccttgagatttgttgattgtcatagcatatgagacaacaattgggaattgtcttctaactagcttgaaaggcaattttgattgtgaaggaga |
41860245 |
T |
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| Q |
219 |
catatctaatcgaggaattaatatcagctcacc |
251 |
Q |
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| T |
41860244 |
catatctaatcgaggaattaataccagctcacc |
41860212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 41879315 - 41879083
Alignment:
| Q |
19 |
agagtcttgagtacttctttgcttttgactctagaaaaggtggtgcacagctgaccattactgaaccttggtttaggtaaatataagcccacattgtcga |
118 |
Q |
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| T |
41879315 |
agagtctcgagtccttgtttgtttttgactctagtaaaggtggcgcacagctgaccattactgaaccttggtttaggtaaatataggcccacagtgtcaa |
41879216 |
T |
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| Q |
119 |
atgagtgaccttgagatttgttgattgtcatagcatatgaaacaacaattgggaattgtcttctaactagcttgaaaggcaattttgattgcgaaggaga |
218 |
Q |
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| T |
41879215 |
aggagtgaccttgagatttgttgattgtcatagcatatgagaaaacaattgggaattgtcttctaattagcttgaaaggccattgtgattgtgaaggaga |
41879116 |
T |
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| Q |
219 |
catatctaatcgaggaattaatatcagctcacc |
251 |
Q |
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| T |
41879115 |
catatctattcgaggaattaatatcagctcacc |
41879083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 24027863 - 24027920
Alignment:
| Q |
124 |
tgaccttgagatttgttgattgtcatagcatatgaaacaacaattgggaattgtcttc |
181 |
Q |
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| T |
24027863 |
tgaccttgtgatttgttgattgtcattgagtatgaaacaacaattgggaattgtcttc |
24027920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 4470579 - 4470635
Alignment:
| Q |
127 |
ccttgagatttgttgattgtcatagcatatgaaacaacaattgggaattgtcttcta |
183 |
Q |
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| T |
4470579 |
ccttgagatttgttgcttgtcattgcataacaaacaataattggaaattgccttcta |
4470635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 149170 - 149222
Alignment:
| Q |
127 |
ccttgagatttgttgattgtcatagcatatgaaacaacaattgggaattgtct |
179 |
Q |
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| T |
149170 |
ccttgagatttgttaattgtcattgcatatgacacaattattgggaactgtct |
149222 |
T |
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