View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_44 (Length: 251)
Name: NF1130_low_44
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49679299 - 49679535
Alignment:
| Q |
1 |
aagattagagatgaagctgggaagattcttactagggagttaaagaatcgaccggttttcgaagcagatgatcaatctgctatggtttatttgttggcaa |
100 |
Q |
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| T |
49679299 |
aagattagagatgaagctgggaagattcttactagggagttaaagaatcgaccggttttcgaagcagatgatcaatctgctatggtttatttgttggcaa |
49679398 |
T |
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| Q |
101 |
ctgggagggaacaatggggtgggaaagtttatcttgagaatcattattatttgcatggttattgggggattttggttgatagatatgaagagatgattga |
200 |
Q |
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| T |
49679399 |
ctgggagggaacaatggggtgggaaagtttatcttgagaatcattattatttgcatggttattgggggattttggttgatagatatgaagagatgattga |
49679498 |
T |
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| Q |
201 |
gaattatcatcctggttttggtgatcatagatggccc |
237 |
Q |
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| T |
49679499 |
gaattatcatcctggttttggtgatcatagatggccc |
49679535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 45168949 - 45169035
Alignment:
| Q |
132 |
tcttgagaatcattattatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttt |
218 |
Q |
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| T |
45168949 |
tcttgagaattcttactatttgcatggttattgggctgggttggttgatcggtatgaggagatgattgagaagtatcatccgggttt |
45169035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 20181151 - 20180970
Alignment:
| Q |
55 |
gttttcgaagcagatgatcaatctgctatggtttatttgttggcaactgggagggaacaatggggtgggaaagtttatcttgagaatcattattatttgc |
154 |
Q |
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| T |
20181151 |
gtttttgaagcggatgatcaatctgctatggtttatttgttggctaaggagaaggaaaagtggggtgataaggtttatcttgagaatggttattacttgc |
20181052 |
T |
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| Q |
155 |
atggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttttggtgatcatagatggcc |
236 |
Q |
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| T |
20181051 |
atggttattgggggattttggttgatagatatgaggagatgattgagaattatcatcctggttttggtgatcataggtggcc |
20180970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 44268499 - 44268318
Alignment:
| Q |
55 |
gttttcgaagcagatgatcaatctgctatggtttatttgttggcaactgggagggaacaatggggtgggaaagtttatcttgagaatcattattatttgc |
154 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||| | | || |||| | ||||||| || ||||||||||||||| |||||| |||| |
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| T |
44268499 |
gtttttgaagcggatgatcaatctgctatggtttatttgttggctaaggagaaggaaaagtggggtgataaggtttatcttgagaatggttattacttgc |
44268400 |
T |
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| Q |
155 |
atggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttttggtgatcatagatggcc |
236 |
Q |
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| T |
44268399 |
atggttattgggggattttggttgatagatatgaggagatgattgagaattatcatcctggttttggtgatcataggtggcc |
44268318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 13714078 - 13713998
Alignment:
| Q |
132 |
tcttgagaatcattattatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcc |
212 |
Q |
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|||||||||| || |||||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||| |
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| T |
13714078 |
tcttgagaattctttttatttgcatggttattgggctgggttggttgatcggtatgaagagatgatggagaagtatcatcc |
13713998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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