View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1130_low_45 (Length: 248)

Name: NF1130_low_45

Description: NF1130

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1130_low_45

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 161; E-Value: 6e-86

Query Start/End: Original strand, 4 - 248

Target Start/End: Complemental strand, 50118249 - 50118006

Alignment:

Q	4	ctccaacaatatcaccatcaccgagcaatggcaagtgaaactgcctttttgaccagatcctcccgtactgtacagcatcaaatacaatgtcagcactaag	103	Q
		\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50118249	ctccaccactatcaccatcac-gagcaatggcaagtaaaactgcctttttgaccagatcctcccgtactgtacagcatcaaatacaatgtcagcactaag	50118151	T

Q	104	gattgagatggaaattnnnnnnnnnnnnnnnnnnnncctcagaatttctaatatttgaaccatagaagagttataactaatccaaagccaatgttgtatt	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	50118150	gattgagatggaaattccccctccccccaaaaaaaacctcagaatttctaatatttgaaccatagaagagttataactaatccaaagccattgttgtatt	50118051	T

Q	204	gctgcggctacaaccaatccaccatattcttccatactttctacc	248	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50118050	gctgcggctacaaccaatccaccatattcttccatactttctacc	50118006	T

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Target: chr3; HSP #2

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 16 - 64

Target Start/End: Original strand, 50490415 - 50490462

Alignment:

Q	16	caccatcaccgagcaatggcaagtgaaactgcctttttgaccagatcct	64	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	50490415	caccatcac-gagcaatggcaagtgaaactgcctttttgactagatcct	50490462	T

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