View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_46 (Length: 246)
Name: NF1130_low_46
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 26790935 - 26790813
Alignment:
| Q |
1 |
aaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgatgtt |
100 |
Q |
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| T |
26790935 |
aaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgatgtt |
26790836 |
T |
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| Q |
101 |
acattggttttattttaatatat |
123 |
Q |
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||||||||||||||||||||||| |
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| T |
26790835 |
acattggttttattttaatatat |
26790813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26784609 - 26784554
Alignment:
| Q |
1 |
aaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaat |
56 |
Q |
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|||||||||||||| |||| ||||||||| |||||||||||||| |||||| |||| |
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| T |
26784609 |
aaggatggaaattcttatacctctccaatatacaggttccatttacttaattcaat |
26784554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26831313 - 26831263
Alignment:
| Q |
1 |
aaggatggaaattcctatatctctccaatttacaggttccattttcttaat |
51 |
Q |
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|||||||||||||| |||| |||||| |||| ||||||| ||||||||||| |
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| T |
26831313 |
aaggatggaaattcttatacctctccgatttgcaggttcgattttcttaat |
26831263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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