View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_5 (Length: 541)
Name: NF1130_low_5
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 30 - 533
Target Start/End: Complemental strand, 23589319 - 23588814
Alignment:
| Q |
30 |
caaagagtaaccatttcatcctgataaacacagcaaatgcaacgaagaataacagaatttagtttgagaacaataagcaattaatcaaactaagtaaaat |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23589319 |
caaagagtaacc-tttcatcctgataaacacagcaaatgcaacgaagaataacacaatttagtttgagaacaataagcaattaatcaaactaagcaaaat |
23589221 |
T |
|
| Q |
130 |
gtagaatagaagcttaaaccatgattaacattaaaagtgaaagaagtacactgatgacataagagttccctacattacctaaatcaaaacaaatacatat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23589220 |
gtagaatagaagcttaaaccatgattaacattaaaagtgaaagaagtacactgatgacataagagttccctacattacctaaatcaaaacaaatacatat |
23589121 |
T |
|
| Q |
230 |
aattaagctactaattcaagagtccctgcnnnnnnnntcatgaaccacccatcaatccaatgac---agtttagcttaatcaacttcctcaattttgggg |
326 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
23589120 |
aattaagctactaattcaagagtccttgcaaaaaaaatcatgaaccacccatcaatcccatgaacaaagtttagcttaatcaacttcctcaattttgggg |
23589021 |
T |
|
| Q |
327 |
ccagcaccgcttccactgccagctgtaggaccatcctcatccatggctcctccagcatctccaccagcaccttgatacatccttgcaatgatagggttgc |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23589020 |
ccagcaccgcttccactgccagctgtaggaccatcctcatccatggctcctccagcatctccaccagcaccttgatacatccttgcaatgatagggttgc |
23588921 |
T |
|
| Q |
427 |
aaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattgaatagccccctcaatagcatcttcaat |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23588920 |
aaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattgaatagccccctcaatagcatcttcaat |
23588821 |
T |
|
| Q |
527 |
attcttc |
533 |
Q |
| |
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|||||| |
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|
| T |
23588820 |
tttcttc |
23588814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 300 - 533
Target Start/End: Complemental strand, 23597899 - 23597666
Alignment:
| Q |
300 |
gcttaatcaacttcctcaattttggggccagcaccgcttccactgccagctgtaggaccatcctcatccatggctcctccagcatctccaccagcacctt |
399 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23597899 |
gcttaatcaacttcctcaattttggggccagcaccacttccactgccagcagcaggtccatcctcatccatggctcctccagcatcaccaccagcacctt |
23597800 |
T |
|
| Q |
400 |
gatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattg |
499 |
Q |
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| T |
23597799 |
gatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaaccattg |
23597700 |
T |
|
| Q |
500 |
aatagccccctcaatagcatcttcaatattcttc |
533 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
23597699 |
aatagccccctcaatagcatcttcaattttcttc |
23597666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 39984594 - 39984678
Alignment:
| Q |
394 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaag |
478 |
Q |
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||||||| |||||| | ||||||||||||||||| | || || || |||||||||||||||||||| |||||||||||| |||| |
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| T |
39984594 |
caccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatcttgtcctcaaactcatcagcctctgcaag |
39984678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 473
Target Start/End: Complemental strand, 8018633 - 8018554
Alignment:
| Q |
394 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctct |
473 |
Q |
| |
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|||||||||||||| | |||||||| |||||||||| || ||| || ||||||||||| || ||||| |||||||||||| |
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| T |
8018633 |
caccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctct |
8018554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 526
Target Start/End: Original strand, 8101615 - 8101747
Alignment:
| Q |
394 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
493 |
Q |
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||||||| |||||| |||||||||| ||||| || || ||| ||||||||||||||||| ||||| ||||| || || |||| || ||| |||| | |
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| T |
8101615 |
caccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaag |
8101714 |
T |
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| Q |
494 |
ccattgaatagccccctcaatagcatcttcaat |
526 |
Q |
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||||||||| || |||||||| ||||| ||||| |
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| T |
8101715 |
ccattgaatggctccctcaattgcatcctcaat |
8101747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 17706893 - 17706803
Alignment:
| Q |
394 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatt |
484 |
Q |
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||||||| |||||| | ||||||||||||||||| | || || | |||||||||||||||||||| ||||| |||||| |||| ||||| |
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| T |
17706893 |
caccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgcaagctgatt |
17706803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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