View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1130_low_9 (Length: 446)
Name: NF1130_low_9
Description: NF1130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1130_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 44969174 - 44969548
Alignment:
| Q |
10 |
aataatatttaccggagagagtaatatgtttagaaactctaatatatatttttatttatttttccttctaacaaactctaatagttgtggtgggtgaaat |
109 |
Q |
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| T |
44969174 |
aataaaatttaccggagagagtaatatgtttagaaactctaatatatatttttatttatttttccttctaacaaactctaatagttgtggtgggtgaaat |
44969273 |
T |
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| Q |
110 |
taggcttgtaatccctttattagcacagtaatagtctattttctttttctctcaactgtcattgtcattttcaattcaataaatcttattgctccatatg |
209 |
Q |
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| T |
44969274 |
taggcttgtaatccctttattagcacagtaatagtctattttctttttctctcaagtgtcattgtcattttcaattcgataaatcttattgctacatatg |
44969373 |
T |
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| Q |
210 |
aatacgtatatacattcatcaggaggagggggacccatgatcaagttatatatataaattgaaacagggggaccaactagtgtggccatttttgcggtca |
309 |
Q |
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| T |
44969374 |
aatacgtatatacattcatcaggagga-ggggacccatgatcaagttatatatataaattgaaacagggggaccaactagtgtggccatttttgctgtca |
44969472 |
T |
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| Q |
310 |
tagagacgtaggtgaggtgaggtacccacacggcattgatctaatagctagctagctactggttgcaggcagataa |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44969473 |
tagagacgtaggtgaggtgaggtacccacacggcattgatctaatagctagctagctactggttgcaggcagataa |
44969548 |
T |
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